Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 RHOQP1-201ENST00000555758 579 ntBASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 MPI-209ENST00000564003 1195 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 AC026979.3-201ENST00000607315 403 ntBASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 AL391825.1-201ENST00000457671 1364 ntBASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.64□□□□□ -0.39
PDLIM3Q53GG5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 AC232323.1-201ENST00000540724 2099 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 REXO1L5P-201ENST00000622260 2098 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 MIR346-201ENST00000362234 95 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 DFFBP1-201ENST00000433250 979 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 AC027307.2-201ENST00000591252 911 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 SPDYE12P-201ENST00000618416 771 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 WASH3P-207ENST00000560956 1394 ntBASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PDLIM3Q53GG5 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms