Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
HSPG2P98160 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
HSPG2P98160 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC8.97□□□□□ -0.97
HSPG2P98160 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 VPS18-202ENST00000558474 873 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC8.97□□□□□ -0.97
HSPG2P98160 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC8.97□□□□□ -0.97
HSPG2P98160 AC026336.4-201ENST00000624565 1050 ntBASIC8.97□□□□□ -0.97
HSPG2P98160 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC8.97□□□□□ -0.97
HSPG2P98160 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC8.97□□□□□ -0.97
HSPG2P98160 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
HSPG2P98160 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC8.97□□□□□ -0.97
HSPG2P98160 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 AC026412.1-206ENST00000502273 206 ntBASIC8.97□□□□□ -0.97
HSPG2P98160 KLF17P1-201ENST00000547105 1126 ntBASIC8.97□□□□□ -0.97
HSPG2P98160 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
HSPG2P98160 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC8.97□□□□□ -0.97
HSPG2P98160 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 SUPT20HL2-201ENST00000486479 2409 ntBASIC8.97□□□□□ -0.97
HSPG2P98160 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC8.97□□□□□ -0.97
HSPG2P98160 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
HSPG2P98160 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
HSPG2P98160 AC092910.2-201ENST00000491262 348 ntBASIC8.96□□□□□ -0.97
HSPG2P98160 AP000920.1-201ENST00000531824 344 ntBASIC8.96□□□□□ -0.97
HSPG2P98160 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC8.96□□□□□ -0.97
HSPG2P98160 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC8.96□□□□□ -0.97
HSPG2P98160 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
HSPG2P98160 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC8.96□□□□□ -0.97
HSPG2P98160 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC8.96□□□□□ -0.97
HSPG2P98160 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
HSPG2P98160 AC117503.4-201ENST00000623229 1418 ntBASIC8.96□□□□□ -0.97
HSPG2P98160 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
HSPG2P98160 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC8.96□□□□□ -0.97
HSPG2P98160 AL080243.1-201ENST00000423293 1060 ntBASIC8.96□□□□□ -0.97
HSPG2P98160 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC8.96□□□□□ -0.97
HSPG2P98160 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC8.96□□□□□ -0.97
HSPG2P98160 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC8.96□□□□□ -0.97
HSPG2P98160 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC8.96□□□□□ -0.97
HSPG2P98160 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC8.96□□□□□ -0.97
HSPG2P98160 MST1L-204ENST00000545160 559 ntTSL 4 BASIC8.96□□□□□ -0.97
HSPG2P98160 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC8.96□□□□□ -0.97
HSPG2P98160 EMP3-204ENST00000596315 761 ntTSL 2 BASIC8.96□□□□□ -0.97
HSPG2P98160 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC8.96□□□□□ -0.97
HSPG2P98160 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC8.96□□□□□ -0.97
HSPG2P98160 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC8.96□□□□□ -0.97
HSPG2P98160 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
HSPG2P98160 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC8.96□□□□□ -0.98
HSPG2P98160 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC8.96□□□□□ -0.98
HSPG2P98160 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
HSPG2P98160 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.98
HSPG2P98160 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC8.96□□□□□ -0.98
HSPG2P98160 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
HSPG2P98160 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms