Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.53□□□□□ -0.24
CLRN1P58418 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
CLRN1P58418 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 PIN1P1-201ENST00000412108 996 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.53□□□□□ -0.24
CLRN1P58418 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.53□□□□□ -0.24
CLRN1P58418 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.53□□□□□ -0.24
CLRN1P58418 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.53□□□□□ -0.24
CLRN1P58418 AL359711.2-201ENST00000563105 872 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 SPDYE22P-201ENST00000582158 798 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 CHCHD2P3-201ENST00000603038 451 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 TMEM261P1-201ENST00000604899 340 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 KRT8P22-201ENST00000562317 1415 ntBASIC13.53□□□□□ -0.24
CLRN1P58418 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.53□□□□□ -0.24
CLRN1P58418 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.53□□□□□ -0.24
CLRN1P58418 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CLRN1P58418 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLRN1P58418 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
CLRN1P58418 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CLRN1P58418 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CLRN1P58418 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLRN1P58418 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLRN1P58418 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 CICP14-201ENST00000629111 2732 ntBASIC13.52□□□□□ -0.24
CLRN1P58418 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.52□□□□□ -0.24
CLRN1P58418 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.52□□□□□ -0.24
CLRN1P58418 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.52□□□□□ -0.25
CLRN1P58418 TERF1P3-201ENST00000505638 1227 ntBASIC13.52□□□□□ -0.25
CLRN1P58418 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.52□□□□□ -0.25
CLRN1P58418 AC124283.3-201ENST00000570869 594 ntBASIC13.52□□□□□ -0.25
CLRN1P58418 AC140912.1-201ENST00000577171 1054 ntBASIC13.52□□□□□ -0.25
CLRN1P58418 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.52□□□□□ -0.25
CLRN1P58418 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.52□□□□□ -0.25
CLRN1P58418 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.25
CLRN1P58418 AC008494.3-201ENST00000606615 944 ntBASIC13.52□□□□□ -0.25
CLRN1P58418 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
CLRN1P58418 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.52□□□□□ -0.25
CLRN1P58418 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.52□□□□□ -0.25
CLRN1P58418 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.52□□□□□ -0.25
CLRN1P58418 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CLRN1P58418 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLRN1P58418 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.52□□□□□ -0.25
CLRN1P58418 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms