Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.73■□□□□ 0.11
CDH6P55285 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.73■□□□□ 0.11
CDH6P55285 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.73■□□□□ 0.11
CDH6P55285 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.73■□□□□ 0.11
CDH6P55285 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CDH6P55285 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.73■□□□□ 0.11
CDH6P55285 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 WASH4P-201ENST00000564273 1246 ntBASIC15.73■□□□□ 0.11
CDH6P55285 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.73■□□□□ 0.11
CDH6P55285 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.73■□□□□ 0.11
CDH6P55285 AC005252.2-201ENST00000624630 1141 ntBASIC15.73■□□□□ 0.11
CDH6P55285 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
CDH6P55285 AC139749.1-202ENST00000617529 3139 ntBASIC15.73■□□□□ 0.11
CDH6P55285 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
CDH6P55285 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CDH6P55285 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CDH6P55285 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CDH6P55285 AC005912.2-201ENST00000619492 2400 ntBASIC15.73■□□□□ 0.11
CDH6P55285 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CDH6P55285 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
CDH6P55285 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.72■□□□□ 0.11
CDH6P55285 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
CDH6P55285 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 KLF2P2-201ENST00000416807 1039 ntBASIC15.72■□□□□ 0.11
CDH6P55285 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 CRB3P1-201ENST00000449338 276 ntBASIC15.72■□□□□ 0.11
CDH6P55285 AC114812.1-204ENST00000449669 728 ntBASIC15.72■□□□□ 0.11
CDH6P55285 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.72■□□□□ 0.11
CDH6P55285 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.72■□□□□ 0.11
CDH6P55285 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.72■□□□□ 0.11
CDH6P55285 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.72■□□□□ 0.11
CDH6P55285 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CDH6P55285 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.72■□□□□ 0.11
CDH6P55285 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.72■□□□□ 0.11
CDH6P55285 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CDH6P55285 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CDH6P55285 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CDH6P55285 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
CDH6P55285 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.71■□□□□ 0.11
CDH6P55285 TP53TG3HP-202ENST00000569755 579 ntBASIC15.71■□□□□ 0.11
CDH6P55285 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.71■□□□□ 0.11
CDH6P55285 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.71■□□□□ 0.11
CDH6P55285 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.71■□□□□ 0.11
CDH6P55285 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CDH6P55285 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.71■□□□□ 0.11
CDH6P55285 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms