Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 WDR7-208ENST00000589935 544 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGCS2P54868 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGCS2P54868 AC008894.3-201ENST00000624324 3103 ntBASIC17.23■□□□□ 0.35
HMGCS2P54868 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGCS2P54868 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 AC013726.1-201ENST00000563747 2285 ntBASIC17.23■□□□□ 0.35
HMGCS2P54868 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGCS2P54868 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGCS2P54868 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGCS2P54868 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGCS2P54868 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
HMGCS2P54868 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 OR2K2-202ENST00000374428 1038 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 AL645933.1-201ENST00000440087 609 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGCS2P54868 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGCS2P54868 PFN2-206ENST00000461930 606 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGCS2P54868 AC104784.1-201ENST00000473096 294 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 AC006122.1-201ENST00000493323 440 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 GCOM2-201ENST00000509133 1104 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC17.22■□□□□ 0.35
HMGCS2P54868 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 BX088702.1-201ENST00000610784 235 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 RAN-210ENST00000541630 1475 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 AC144522.1-201ENST00000625111 1658 ntBASIC17.22■□□□□ 0.35
HMGCS2P54868 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HMGCS2P54868 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGCS2P54868 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGCS2P54868 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HMGCS2P54868 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGCS2P54868 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGCS2P54868 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGCS2P54868 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGCS2P54868 RN7SL181P-201ENST00000462921 277 ntBASIC17.21■□□□□ 0.35
HMGCS2P54868 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.21■□□□□ 0.35
HMGCS2P54868 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC17.21■□□□□ 0.35
HMGCS2P54868 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC17.21■□□□□ 0.35
HMGCS2P54868 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC17.21■□□□□ 0.35
HMGCS2P54868 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGCS2P54868 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms