Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 CR383656.3-201ENST00000551315 183 ntBASIC15.71■□□□□ 0.11
COL4A4P53420 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
COL4A4P53420 AC093752.3-201ENST00000567343 901 ntBASIC15.71■□□□□ 0.11
COL4A4P53420 HKR1-225ENST00000592168 566 ntTSL 4 BASIC15.71■□□□□ 0.11
COL4A4P53420 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.71■□□□□ 0.11
COL4A4P53420 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
COL4A4P53420 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
COL4A4P53420 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
COL4A4P53420 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.71■□□□□ 0.11
COL4A4P53420 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
COL4A4P53420 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL4A4P53420 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL4A4P53420 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.71■□□□□ 0.1
COL4A4P53420 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.71■□□□□ 0.1
COL4A4P53420 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
COL4A4P53420 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
COL4A4P53420 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
COL4A4P53420 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC15.7■□□□□ 0.1
COL4A4P53420 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.7■□□□□ 0.1
COL4A4P53420 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
COL4A4P53420 TSPY25P-201ENST00000429463 745 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 RPSAP15-201ENST00000448168 861 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 ALG1L6P-201ENST00000515248 758 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 AC009884.2-201ENST00000603110 324 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 ETV2-207ENST00000619399 994 ntTSL 5 BASIC15.7■□□□□ 0.1
COL4A4P53420 AC244250.3-201ENST00000620749 366 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 NHP2-202ENST00000314397 599 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.7■□□□□ 0.1
COL4A4P53420 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 HCG27-204ENST00000424675 895 ntTSL 3 BASIC15.7■□□□□ 0.1
COL4A4P53420 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC15.7■□□□□ 0.1
COL4A4P53420 RN7SL396P-201ENST00000471086 295 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.7■□□□□ 0.1
COL4A4P53420 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.7■□□□□ 0.1
COL4A4P53420 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.7■□□□□ 0.1
COL4A4P53420 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
COL4A4P53420 AC027139.1-201ENST00000565286 951 ntBASIC15.7■□□□□ 0.1
COL4A4P53420 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC15.7■□□□□ 0.1
COL4A4P53420 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC15.7■□□□□ 0.1
COL4A4P53420 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.7■□□□□ 0.1
COL4A4P53420 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.7■□□□□ 0.1
COL4A4P53420 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL4A4P53420 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL4A4P53420 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL4A4P53420 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
COL4A4P53420 COX20P1-201ENST00000366529 357 ntBASIC15.69■□□□□ 0.1
COL4A4P53420 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL4A4P53420 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 PGAM1P12-201ENST00000505622 748 ntBASIC15.69■□□□□ 0.1
COL4A4P53420 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.69■□□□□ 0.1
COL4A4P53420 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.69■□□□□ 0.1
COL4A4P53420 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms