Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 DFFBP1-201ENST00000433250 979 ntBASIC14.26□□□□□ -0.13
RFX3P48380 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.26□□□□□ -0.13
RFX3P48380 FAM207CP-201ENST00000443486 507 ntBASIC14.26□□□□□ -0.13
RFX3P48380 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.26□□□□□ -0.13
RFX3P48380 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.26□□□□□ -0.13
RFX3P48380 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.26□□□□□ -0.13
RFX3P48380 AC092364.2-202ENST00000597012 1073 ntBASIC14.26□□□□□ -0.13
RFX3P48380 AL391069.4-201ENST00000609583 481 ntBASIC14.26□□□□□ -0.13
RFX3P48380 MIR8072-201ENST00000614241 80 ntBASIC14.26□□□□□ -0.13
RFX3P48380 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.25□□□□□ -0.13
RFX3P48380 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.25□□□□□ -0.13
RFX3P48380 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 AP000845.1-201ENST00000581677 2131 ntBASIC14.25□□□□□ -0.13
RFX3P48380 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 AC107373.2-201ENST00000607735 490 ntBASIC14.25□□□□□ -0.13
RFX3P48380 AC093726.1-201ENST00000608064 963 ntBASIC14.25□□□□□ -0.13
RFX3P48380 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 AC126335.2-201ENST00000623362 4637 ntBASIC14.25□□□□□ -0.13
RFX3P48380 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RFX3P48380 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
RFX3P48380 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.25□□□□□ -0.13
RFX3P48380 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
RFX3P48380 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
RFX3P48380 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
RFX3P48380 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
RFX3P48380 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms