Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 SNX15-201ENST00000352068 771 ntTSL 5 BASIC17.68■□□□□ 0.42
BRCA1P38398 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 RPL3P2-204ENST00000413027 1203 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 AC025186.1-201ENST00000478174 870 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 RN7SL556P-201ENST00000582856 298 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC17.68■□□□□ 0.42
BRCA1P38398 GGNBP1-204ENST00000613113 887 ntBASIC17.68■□□□□ 0.42
BRCA1P38398 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.68■□□□□ 0.42
BRCA1P38398 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
BRCA1P38398 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
BRCA1P38398 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
BRCA1P38398 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
BRCA1P38398 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
BRCA1P38398 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.67■□□□□ 0.42
BRCA1P38398 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 AC092570.1-201ENST00000414446 469 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.67■□□□□ 0.42
BRCA1P38398 RN7SL788P-201ENST00000460504 316 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC17.67■□□□□ 0.42
BRCA1P38398 AC142086.5-202ENST00000562500 217 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC17.67■□□□□ 0.42
BRCA1P38398 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.67■□□□□ 0.42
BRCA1P38398 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.67■□□□□ 0.42
BRCA1P38398 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
BRCA1P38398 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
BRCA1P38398 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.67■□□□□ 0.42
BRCA1P38398 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
BRCA1P38398 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 NRADDP-201ENST00000437305 691 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC17.67■□□□□ 0.42
BRCA1P38398 AC092612.1-201ENST00000514501 998 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC17.67■□□□□ 0.42
BRCA1P38398 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC17.67■□□□□ 0.42
BRCA1P38398 ANKRD26P1-203ENST00000569528 966 ntBASIC17.67■□□□□ 0.42
BRCA1P38398 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.67■□□□□ 0.42
BRCA1P38398 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.67■□□□□ 0.42
BRCA1P38398 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
BRCA1P38398 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
BRCA1P38398 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCA1P38398 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
BRCA1P38398 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 PSAT1P2-201ENST00000426107 972 ntBASIC17.66■□□□□ 0.42
BRCA1P38398 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC17.66■□□□□ 0.42
BRCA1P38398 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCA1P38398 AC113347.2-201ENST00000512350 279 ntBASIC17.66■□□□□ 0.42
BRCA1P38398 AC090136.2-201ENST00000517809 420 ntBASIC17.66■□□□□ 0.42
BRCA1P38398 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCA1P38398 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 AC087203.1-201ENST00000532111 1181 ntBASIC17.66■□□□□ 0.42
BRCA1P38398 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC17.66■□□□□ 0.42
BRCA1P38398 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.66■□□□□ 0.42
BRCA1P38398 AC080013.5-201ENST00000607044 679 ntBASIC17.66■□□□□ 0.42
BRCA1P38398 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
BRCA1P38398 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 AL365181.1-201ENST00000564032 1828 ntBASIC17.66■□□□□ 0.42
BRCA1P38398 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
BRCA1P38398 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
BRCA1P38398 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms