Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
HOXC9P31274 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HOXC9P31274 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.68■□□□□ 0.74
HOXC9P31274 ACE3P-201ENST00000423435 1973 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 KRT8P28-201ENST00000433288 1390 ntBASIC19.68■□□□□ 0.74
HOXC9P31274 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HOXC9P31274 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC9P31274 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 AC026320.2-201ENST00000434379 478 ntBASIC19.67■□□□□ 0.74
HOXC9P31274 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC9P31274 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC19.67■□□□□ 0.74
HOXC9P31274 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC19.67■□□□□ 0.74
HOXC9P31274 MIR6769A-201ENST00000617340 73 ntBASIC19.67■□□□□ 0.74
HOXC9P31274 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC9P31274 FAM90A2P-201ENST00000511144 1395 ntBASIC19.67■□□□□ 0.74
HOXC9P31274 FAM90A25P-201ENST00000528404 1395 ntBASIC19.67■□□□□ 0.74
HOXC9P31274 AC015909.3-201ENST00000572855 1794 ntBASIC19.67■□□□□ 0.74
HOXC9P31274 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HOXC9P31274 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HOXC9P31274 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.67■□□□□ 0.74
HOXC9P31274 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC9P31274 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 AC011270.2-201ENST00000624293 2550 ntBASIC19.66■□□□□ 0.74
HOXC9P31274 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.66■□□□□ 0.74
HOXC9P31274 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 RPL8P2-201ENST00000430538 502 ntBASIC19.66■□□□□ 0.74
HOXC9P31274 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC9P31274 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HOXC9P31274 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXC9P31274 NPM1P43-201ENST00000558669 786 ntBASIC19.66■□□□□ 0.74
HOXC9P31274 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 PHBP15-201ENST00000574228 665 ntBASIC19.66■□□□□ 0.74
HOXC9P31274 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXC9P31274 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.66■□□□□ 0.74
HOXC9P31274 MRPL37P1-201ENST00000592451 1337 ntBASIC19.66■□□□□ 0.74
HOXC9P31274 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC9P31274 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC19.66■□□□□ 0.74
HOXC9P31274 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.66■□□□□ 0.74
HOXC9P31274 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HOXC9P31274 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 CICP23-201ENST00000605013 2741 ntBASIC19.65■□□□□ 0.74
HOXC9P31274 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.65■□□□□ 0.74
HOXC9P31274 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC19.65■□□□□ 0.74
HOXC9P31274 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.65■□□□□ 0.74
HOXC9P31274 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 AC092171.5-201ENST00000608012 942 ntBASIC19.65■□□□□ 0.74
HOXC9P31274 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 AC011491.1-203ENST00000637688 543 ntBASIC19.65■□□□□ 0.74
HOXC9P31274 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms