Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.46■□□□□ 0.23
RFX1P22670 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.46■□□□□ 0.23
RFX1P22670 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.46■□□□□ 0.23
RFX1P22670 AC093813.1-201ENST00000605066 256 ntBASIC16.46■□□□□ 0.23
RFX1P22670 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX1P22670 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFX1P22670 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX1P22670 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.46■□□□□ 0.23
RFX1P22670 AC106881.1-201ENST00000605849 3329 ntBASIC16.46■□□□□ 0.23
RFX1P22670 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFX1P22670 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.46■□□□□ 0.22
RFX1P22670 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
RFX1P22670 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFX1P22670 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
RFX1P22670 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
RFX1P22670 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.46■□□□□ 0.22
RFX1P22670 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
RFX1P22670 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.45■□□□□ 0.22
RFX1P22670 AC004945.1-201ENST00000416738 983 ntBASIC16.45■□□□□ 0.22
RFX1P22670 AC099336.1-201ENST00000417053 1171 ntBASIC16.45■□□□□ 0.22
RFX1P22670 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 CSF2RBP1-201ENST00000447905 391 ntBASIC16.45■□□□□ 0.22
RFX1P22670 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.45■□□□□ 0.22
RFX1P22670 RNA5SP412-201ENST00000516234 123 ntBASIC16.45■□□□□ 0.22
RFX1P22670 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.45■□□□□ 0.22
RFX1P22670 PTP4A1P2-201ENST00000546033 454 ntBASIC16.45■□□□□ 0.22
RFX1P22670 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RFX1P22670 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 RETN-203ENST00000629642 400 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 AL138799.1-201ENST00000448213 1675 ntBASIC16.45■□□□□ 0.22
RFX1P22670 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFX1P22670 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
RFX1P22670 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC16.45■□□□□ 0.22
RFX1P22670 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.44■□□□□ 0.22
RFX1P22670 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX1P22670 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
RFX1P22670 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFX1P22670 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX1P22670 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX1P22670 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.44■□□□□ 0.22
RFX1P22670 YBX1P6-201ENST00000442962 1002 ntBASIC16.44■□□□□ 0.22
RFX1P22670 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX1P22670 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.44■□□□□ 0.22
RFX1P22670 BRI3BPP1-201ENST00000594224 787 ntBASIC16.44■□□□□ 0.22
RFX1P22670 AC010328.2-201ENST00000597698 1111 ntBASIC16.44■□□□□ 0.22
RFX1P22670 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.44■□□□□ 0.22
RFX1P22670 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms