Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.092e-6■■■■■ 87
SF3B1O75533 ATG13-211ENST00000528494 2351 ntTSL 1 (best) BASIC13.22□□□□□ -0.292e-6■■■■■ 87
SF3B1O75533 ATG13-207ENST00000526508 4199 ntTSL 5 BASIC10.26□□□□□ -0.772e-6■■■■■ 87
SF3B1O75533 ATG13-201ENST00000359513 4348 ntTSL 1 (best) BASIC8.9□□□□□ -0.982e-6■■■■■ 87
SF3B1O75533 ATG13-203ENST00000524625 4014 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.072e-6■■■■■ 87
SF3B1O75533 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.421e-6■■■■■ 87
SF3B1O75533 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.96□□□□□ -1.461e-6■■■■■ 87
SF3B1O75533 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.14□□□□□ -1.591e-6■■■■■ 87
SF3B1O75533 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.04□□□□□ -1.61e-6■■■■■ 87
SF3B1O75533 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.661e-6■■■■■ 87
SF3B1O75533 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.24□□□□□ -1.731e-6■■■■■ 87
SF3B1O75533 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.81e-6■■■■■ 87
SF3B1O75533 FANCL-206ENST00000427708 864 ntTSL 514.26□□□□□ -0.131e-6■■■■■ 86.9
SF3B1O75533 FANCL-205ENST00000417361 545 ntTSL 313.41□□□□□ -0.261e-6■■■■■ 86.9
SF3B1O75533 FANCL-208ENST00000449070 964 ntTSL 1 (best)12.2□□□□□ -0.461e-6■■■■■ 86.9
SF3B1O75533 FANCL-207ENST00000446381 487 ntTSL 511.54□□□□□ -0.561e-6■■■■■ 86.9
SF3B1O75533 FANCL-204ENST00000403676 849 ntTSL 3 BASIC9.86□□□□□ -0.831e-6■■■■■ 86.9
SF3B1O75533 FANCL-203ENST00000403295 1576 ntTSL 1 (best) BASIC8.69□□□□□ -1.021e-6■■■■■ 86.9
SF3B1O75533 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.091e-6■■■■■ 86.9
SF3B1O75533 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC8.24□□□□□ -1.091e-6■■■■■ 86.9
SF3B1O75533 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.514e-7■■■■■ 86.9
SF3B1O75533 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.29■■□□□ 1.484e-7■■■■■ 86.9
SF3B1O75533 USF2-216ENST00000607959 1920 ntTSL 523.05■■□□□ 1.284e-7■■■■■ 86.9
SF3B1O75533 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.39■■□□□ 1.014e-7■■■■■ 86.9
SF3B1O75533 FSCN1-204ENST00000447103 713 ntTSL 421.25■□□□□ 0.992e-7■■■■■ 86.9
SF3B1O75533 FSCN1-202ENST00000405801 550 ntTSL 420.43■□□□□ 0.862e-7■■■■■ 86.9
SF3B1O75533 FSCN1-203ENST00000444748 580 ntTSL 320.31■□□□□ 0.842e-7■■■■■ 86.9
SF3B1O75533 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.19■□□□□ 0.824e-7■■■■■ 86.9
SF3B1O75533 GET4-207ENST00000483469 370 ntTSL 220.12■□□□□ 0.815e-6■■■■■ 86.9
SF3B1O75533 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.59■□□□□ 0.734e-7■■■■■ 86.9
SF3B1O75533 USF2-213ENST00000600341 1392 ntTSL 219.5■□□□□ 0.714e-7■■■■■ 86.9
SF3B1O75533 USF2-211ENST00000599471 1173 ntTSL 319.04■□□□□ 0.644e-7■■■■■ 86.9
SF3B1O75533 USF2-208ENST00000596380 550 ntTSL 318.22■□□□□ 0.514e-7■■■■■ 86.9
SF3B1O75533 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.79■□□□□ 0.124e-16■■■■■ 86.9
SF3B1O75533 GTF3C1-209ENST00000568569 540 ntTSL 513.14□□□□□ -0.315e-6■■■■■ 86.9
SF3B1O75533 IPO5-202ENST00000357602 4335 ntAPPRIS P1 TSL 512.61□□□□□ -0.395e-6■■■■■ 86.9
SF3B1O75533 GET4-204ENST00000426056 502 ntTSL 411.3□□□□□ -0.65e-6■■■■■ 86.9
SF3B1O75533 GTF3C1-206ENST00000566779 645 ntTSL 311.09□□□□□ -0.635e-6■■■■■ 86.9
SF3B1O75533 GTF3C1-212ENST00000570129 505 ntTSL 510.63□□□□□ -0.715e-6■■■■■ 86.9
SF3B1O75533 USF2-212ENST00000599625 446 ntTSL 210.07□□□□□ -0.84e-7■■■■■ 86.9
SF3B1O75533 EIF3L-211ENST00000476955 583 ntTSL 59.4□□□□□ -0.95e-6■■■■■ 86.9
SF3B1O75533 IPO5-208ENST00000469360 3505 ntTSL 29.25□□□□□ -0.935e-6■■■■■ 86.9
SF3B1O75533 CNTRL-212ENST00000613863 2418 ntTSL 5 BASIC8.22□□□□□ -1.095e-6■■■■■ 86.9
SF3B1O75533 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.175e-6■■■■■ 86.9
SF3B1O75533 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.215e-6■■■■■ 86.9
SF3B1O75533 EIF3L-206ENST00000439997 787 ntTSL 57.13□□□□□ -1.275e-6■■■■■ 86.9
SF3B1O75533 USF2-209ENST00000597671 464 ntTSL 56.94□□□□□ -1.34e-7■■■■■ 86.9
SF3B1O75533 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.485e-6■■■■■ 86.9
SF3B1O75533 CNTRL-203ENST00000373845 3881 ntTSL 1 (best)5.73□□□□□ -1.495e-6■■■■■ 86.9
SF3B1O75533 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.525e-6■■■■■ 86.9
SF3B1O75533 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.09□□□□□ -1.595e-6■■■■■ 86.9
SF3B1O75533 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.03□□□□□ -1.65e-6■■■■■ 86.9
SF3B1O75533 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.97□□□□□ -1.615e-6■■■■■ 86.9
SF3B1O75533 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.685e-6■■■■■ 86.9
SF3B1O75533 EIF3L-205ENST00000436452 574 ntTSL 44.33□□□□□ -1.725e-6■■■■■ 86.9
SF3B1O75533 DROSHA-213ENST00000511778 1261 ntTSL 33.77□□□□□ -1.815e-6■■■■■ 86.9
SF3B1O75533 TMBIM4-207ENST00000542072 220 ntTSL 33.58□□□□□ -1.844e-16■■■■■ 86.9
SF3B1O75533 RBM33-208ENST00000438356 547 ntTSL 413.12□□□□□ -0.311e-6■■■■■ 86.9
SF3B1O75533 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.34e-6■■■■■ 86.9
SF3B1O75533 SREBF1-211ENST00000476994 591 ntTSL 218.82■□□□□ 0.64e-6■■■■■ 86.9
SF3B1O75533 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.123e-6■■■■■ 86.9
SF3B1O75533 DLG1-207ENST00000419227 1771 ntTSL 216.16■□□□□ 0.182e-6■■■■■ 86.8
SF3B1O75533 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.043e-7■■■■■ 86.8
SF3B1O75533 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.58□□□□□ -0.073e-7■■■■■ 86.8
SF3B1O75533 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC14.52□□□□□ -0.083e-7■■■■■ 86.8
SF3B1O75533 UBA1-208ENST00000457753 809 ntTSL 518.86■□□□□ 0.614e-6■■■■■ 86.8
SF3B1O75533 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.544e-6■■■■■ 86.8
SF3B1O75533 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.284e-6■■■■■ 86.8
SF3B1O75533 UBA1-205ENST00000427561 671 ntTSL 515.15■□□□□ 0.024e-6■■■■■ 86.8
SF3B1O75533 MAN1B1-205ENST00000480100 3483 ntTSL 213.3□□□□□ -0.284e-6■■■■■ 86.8
SF3B1O75533 DLG5-207ENST00000475613 7246 ntTSL 512.64□□□□□ -0.395e-6■■■■■ 86.8
SF3B1O75533 UBA1-207ENST00000451702 1706 ntTSL 511.74□□□□□ -0.534e-6■■■■■ 86.8
SF3B1O75533 MAN1B1-206ENST00000535028 3886 ntTSL 211.26□□□□□ -0.614e-6■■■■■ 86.8
SF3B1O75533 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -16e-6■■■■■ 86.8
SF3B1O75533 MTA1-210ENST00000481012 987 ntTSL 518.47■□□□□ 0.553e-6■■■■■ 86.7
SF3B1O75533 MTA1-204ENST00000424723 904 ntTSL 1 (best)16.89■□□□□ 0.293e-6■■■■■ 86.7
SF3B1O75533 PPP6R2-206ENST00000427222 1811 ntTSL 518.76■□□□□ 0.593e-6■■■■■ 86.7
SF3B1O75533 PPP6R2-205ENST00000401672 2199 ntTSL 213.96□□□□□ -0.183e-6■■■■■ 86.7
SF3B1O75533 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.741e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-215ENST00000546172 869 ntTSL 519.55■□□□□ 0.721e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.84■□□□□ 0.611e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-213ENST00000543289 3356 ntTSL 218.33■□□□□ 0.521e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.23■□□□□ 0.511e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17■□□□□ 0.311e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.95■□□□□ 0.31e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-205ENST00000534853 745 ntTSL 516.78■□□□□ 0.281e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-208ENST00000538662 1186 ntTSL 216.56■□□□□ 0.241e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-204ENST00000436115 2879 ntTSL 515.55■□□□□ 0.081e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.09■□□□□ 0.011e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.63□□□□□ -0.071e-6■■■■■ 86.6
SF3B1O75533 NDUFS7-214ENST00000545446 3089 ntTSL 214.55□□□□□ -0.081e-6■■■■■ 86.6
SF3B1O75533 PCNT-205ENST00000480896 10485 ntTSL 1 (best)11.09□□□□□ -0.636e-6■■■■■ 86.6
SF3B1O75533 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.51■□□□□ 0.714e-6■■■■■ 86.6
SF3B1O75533 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.86■□□□□ 0.454e-6■■■■■ 86.6
SF3B1O75533 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.7■□□□□ 0.424e-6■■■■■ 86.6
SF3B1O75533 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.925e-6■■■■■ 86.6
SF3B1O75533 IPO11-205ENST00000424533 3005 ntTSL 27.8□□□□□ -1.165e-6■■■■■ 86.6
SF3B1O75533 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.15■□□□□ 0.342e-6■■■■■ 86.6
SF3B1O75533 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.332e-6■■■■■ 86.6
SF3B1O75533 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.052e-6■■■■■ 86.6
Retrieved 100 of 46,956 protein–RNA pairs in 1362.8 ms