Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3B1O00203 AC092552.1-201ENST00000547243 906 ntBASIC15.29■□□□□ 0.04
AP3B1O00203 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 TMEM261P1-201ENST00000604899 340 ntBASIC15.29■□□□□ 0.04
AP3B1O00203 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3B1O00203 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.29■□□□□ 0.04
AP3B1O00203 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 AC023090.2-201ENST00000625182 2110 ntBASIC15.29■□□□□ 0.04
AP3B1O00203 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3B1O00203 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3B1O00203 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3B1O00203 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3B1O00203 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3B1O00203 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3B1O00203 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 ACKR1-201ENST00000368121 1240 ntBASIC15.28■□□□□ 0.04
AP3B1O00203 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
AP3B1O00203 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.28■□□□□ 0.04
AP3B1O00203 TLE1P1-201ENST00000422965 589 ntBASIC15.28■□□□□ 0.04
AP3B1O00203 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.28■□□□□ 0.04
AP3B1O00203 AC092183.1-201ENST00000469884 875 ntBASIC15.28■□□□□ 0.04
AP3B1O00203 GIMAP3P-201ENST00000495150 836 ntBASIC15.28■□□□□ 0.04
AP3B1O00203 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3B1O00203 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.28■□□□□ 0.04
AP3B1O00203 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.28■□□□□ 0.04
AP3B1O00203 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
AP3B1O00203 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.28■□□□□ 0.04
AP3B1O00203 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 AC133539.2-201ENST00000604757 467 ntBASIC15.28■□□□□ 0.04
AP3B1O00203 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3B1O00203 AP005019.2-201ENST00000615104 511 ntBASIC15.28■□□□□ 0.04
AP3B1O00203 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
AP3B1O00203 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3B1O00203 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
AP3B1O00203 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 AC055811.4-201ENST00000624039 1754 ntBASIC15.27■□□□□ 0.04
AP3B1O00203 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.27■□□□□ 0.04
AP3B1O00203 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
AP3B1O00203 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.27■□□□□ 0.04
AP3B1O00203 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
AP3B1O00203 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
AP3B1O00203 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.27■□□□□ 0.04
AP3B1O00203 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.27■□□□□ 0.04
AP3B1O00203 GNAQP1-201ENST00000444815 1067 ntBASIC15.27■□□□□ 0.04
AP3B1O00203 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.27■□□□□ 0.04
AP3B1O00203 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms