Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 AC007541.1-201ENST00000570282 1469 ntBASIC12.26□□□□□ -0.45
FOXA2Q9Y261 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
FOXA2Q9Y261 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.25□□□□□ -0.45
FOXA2Q9Y261 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 PIN1P1-201ENST00000412108 996 ntBASIC12.25□□□□□ -0.45
FOXA2Q9Y261 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 AC104596.2-201ENST00000512793 793 ntBASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 POLD4-211ENST00000539074 714 ntTSL 3 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 INO80C-210ENST00000590757 595 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 AC099568.2-201ENST00000609194 695 ntBASIC12.25□□□□□ -0.45
FOXA2Q9Y261 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SLC7A15P-201ENST00000424028 1363 ntBASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TKT-201ENST00000296289 1931 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.25□□□□□ -0.45
FOXA2Q9Y261 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
FOXA2Q9Y261 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms