Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 FAM58DP-201ENST00000428076 619 ntBASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC040169.1-201ENST00000565382 521 ntBASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC022145.2-201ENST00000598203 171 ntBASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC105339.1-204ENST00000636249 355 ntBASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AL033527.5-202ENST00000641632 1098 ntBASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28BQ9BUN5 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 KRT126P-201ENST00000549467 1181 ntBASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 BX640515.1-201ENST00000617215 977 ntBASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 KRT8P22-201ENST00000562317 1415 ntBASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 AMT-221ENST00000538581 2038 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 AC118758.2-201ENST00000614242 2813 ntBASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28BQ9BUN5 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AGGF1P1-201ENST00000509500 2073 ntBASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CCDC28BQ9BUN5 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms