Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 CICP23-201ENST00000605013 2741 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AL360270.3-201ENST00000609118 1348 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AC127383.1-201ENST00000444697 1800 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 CCL25-202ENST00000315626 450 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AC108734.2-201ENST00000420887 1069 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 AC114947.1-202ENST00000514136 344 ntBASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS13AQ96RL7 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 SOD2-205ENST00000444946 917 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 AC090136.2-201ENST00000517809 420 ntBASIC14.5□□□□□ -0.09
VPS13AQ96RL7 IGHV1-12-201ENST00000518307 205 ntBASIC14.5□□□□□ -0.09
VPS13AQ96RL7 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 FAU-201ENST00000279259 461 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS13AQ96RL7 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC14.49□□□□□ -0.09
VPS13AQ96RL7 FDPSP7-201ENST00000429043 1054 ntBASIC14.49□□□□□ -0.09
VPS13AQ96RL7 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms