Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 Z97180.1-201ENST00000445173 988 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 HIST2H2BB-201ENST00000449108 381 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 MIR4722-201ENST00000578292 60 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 U62317.3-201ENST00000608319 855 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AC007663.3-201ENST00000609632 465 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HDDC3Q8N4P3 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 CHMP1AP1-201ENST00000445563 662 ntBASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 RN7SL720P-201ENST00000488178 304 ntBASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 MIR4706-201ENST00000582134 82 ntBASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AP001002.3-201ENST00000623482 206 ntBASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 PAUPAR-201ENST00000630360 2965 ntBASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HDDC3Q8N4P3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
HDDC3Q8N4P3 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms