Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
VPS13CQ709C8 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
VPS13CQ709C8 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.23□□□□□ -0.45
VPS13CQ709C8 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 ENPP7P8-202ENST00000527856 1345 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 RPSAP15-201ENST00000448168 861 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 AP003398.1-201ENST00000531124 318 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 GOLGA2P7-209ENST00000560408 745 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 RNA5SP359-201ENST00000364838 113 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 RN7SL470P-201ENST00000583069 259 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 AC023024.2-201ENST00000623561 1993 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 RN7SL494P-201ENST00000461517 304 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 PEBP1P2-201ENST00000603980 558 ntBASIC12.22□□□□□ -0.45
VPS13CQ709C8 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
VPS13CQ709C8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
VPS13CQ709C8 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 KRT18P36-201ENST00000411618 1276 ntBASIC12.21□□□□□ -0.45
VPS13CQ709C8 AC004522.1-201ENST00000419978 654 ntBASIC12.21□□□□□ -0.45
VPS13CQ709C8 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 AC067931.2-201ENST00000623655 2003 ntBASIC12.21□□□□□ -0.45
VPS13CQ709C8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
VPS13CQ709C8 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.21□□□□□ -0.45
VPS13CQ709C8 AL139339.2-201ENST00000608063 657 ntBASIC12.21□□□□□ -0.45
VPS13CQ709C8 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13CQ709C8 MARK2P16-201ENST00000605714 1723 ntBASIC12.21□□□□□ -0.46
VPS13CQ709C8 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 AC084752.1-201ENST00000509766 622 ntBASIC12.21□□□□□ -0.46
VPS13CQ709C8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
VPS13CQ709C8 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.21□□□□□ -0.46
VPS13CQ709C8 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
VPS13CQ709C8 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
VPS13CQ709C8 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms