Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 TUBBP5-203ENST00000508529 1334 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC008132.1-202ENST00000342005 1389 ntBASIC14.59□□□□□ -0.07
COL28A1Q2UY09 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.59□□□□□ -0.07
COL28A1Q2UY09 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL28A1Q2UY09 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.58□□□□□ -0.07
COL28A1Q2UY09 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL28A1Q2UY09 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL28A1Q2UY09 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.58□□□□□ -0.07
COL28A1Q2UY09 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 KRT18P64-201ENST00000434946 1219 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 EEF1DP4-201ENST00000446006 880 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 SERPINA13P-202ENST00000478994 924 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 AC024681.1-201ENST00000521917 487 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 MIR6756-201ENST00000616240 63 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 PRAL-201ENST00000624952 3286 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.58□□□□□ -0.08
COL28A1Q2UY09 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL28A1Q2UY09 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 AL627389.1-201ENST00000413508 1182 ntBASIC14.57□□□□□ -0.08
COL28A1Q2UY09 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 RN7SL8P-201ENST00000461771 266 ntBASIC14.57□□□□□ -0.08
COL28A1Q2UY09 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL28A1Q2UY09 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms