Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC008132.1-202ENST00000342005 1389 ntBASIC12.29□□□□□ -0.44
LMO4P61968 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LMO4P61968 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.29□□□□□ -0.44
LMO4P61968 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
LMO4P61968 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LMO4P61968 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.28□□□□□ -0.44
LMO4P61968 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
LMO4P61968 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.28□□□□□ -0.44
LMO4P61968 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.28□□□□□ -0.44
LMO4P61968 ACTG1P2-201ENST00000415776 1125 ntBASIC12.28□□□□□ -0.44
LMO4P61968 ACTG1P11-201ENST00000425411 1125 ntBASIC12.28□□□□□ -0.44
LMO4P61968 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC12.28□□□□□ -0.44
LMO4P61968 AC245884.6-201ENST00000515672 1067 ntBASIC12.28□□□□□ -0.44
LMO4P61968 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 AL160314.3-201ENST00000556041 767 ntBASIC12.28□□□□□ -0.44
LMO4P61968 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 AC008805.1-201ENST00000590892 364 ntBASIC12.28□□□□□ -0.44
LMO4P61968 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
LMO4P61968 AC009884.2-201ENST00000603110 324 ntBASIC12.28□□□□□ -0.44
LMO4P61968 AL132994.2-201ENST00000603120 687 ntBASIC12.28□□□□□ -0.44
LMO4P61968 MIR6720-201ENST00000611664 98 ntBASIC12.28□□□□□ -0.44
LMO4P61968 ZBED1P1-201ENST00000502364 1930 ntBASIC12.28□□□□□ -0.44
LMO4P61968 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.28□□□□□ -0.44
LMO4P61968 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.28□□□□□ -0.44
LMO4P61968 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LMO4P61968 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.27□□□□□ -0.44
LMO4P61968 AC007292.2-201ENST00000593524 1812 ntBASIC12.27□□□□□ -0.44
LMO4P61968 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.27□□□□□ -0.44
LMO4P61968 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 MBLAC2-202ENST00000514906 1936 ntBASIC12.27□□□□□ -0.44
LMO4P61968 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.27□□□□□ -0.44
LMO4P61968 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.27□□□□□ -0.44
LMO4P61968 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 AC138035.3-201ENST00000622706 2791 ntBASIC12.27□□□□□ -0.44
LMO4P61968 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LMO4P61968 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.27□□□□□ -0.45
LMO4P61968 MSRA-203ENST00000441698 788 ntTSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 AL035414.1-201ENST00000451327 857 ntBASIC12.27□□□□□ -0.45
LMO4P61968 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC12.27□□□□□ -0.45
LMO4P61968 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC12.27□□□□□ -0.45
LMO4P61968 RN7SL720P-201ENST00000488178 304 ntBASIC12.27□□□□□ -0.45
LMO4P61968 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 AC024681.1-201ENST00000521917 487 ntBASIC12.27□□□□□ -0.45
LMO4P61968 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
LMO4P61968 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.27□□□□□ -0.45
LMO4P61968 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC12.27□□□□□ -0.45
LMO4P61968 AC005962.1-201ENST00000584100 773 ntBASIC12.27□□□□□ -0.45
LMO4P61968 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 RPL35-206ENST00000629845 340 ntTSL 5 BASIC12.27□□□□□ -0.45
LMO4P61968 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.27□□□□□ -0.45
LMO4P61968 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.27□□□□□ -0.45
LMO4P61968 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
LMO4P61968 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms