Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 AC113367.3-201ENST00000508316 1912 ntBASIC14.9□□□□□ -0.02
PKNOX1P55347 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PKNOX1P55347 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
PKNOX1P55347 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.89□□□□□ -0.03
PKNOX1P55347 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.89□□□□□ -0.03
PKNOX1P55347 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.89□□□□□ -0.03
PKNOX1P55347 AC067863.1-201ENST00000494933 530 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.89□□□□□ -0.03
PKNOX1P55347 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.89□□□□□ -0.03
PKNOX1P55347 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
PKNOX1P55347 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 AC044860.1-202ENST00000559481 777 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 AC004449.1-201ENST00000564240 433 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 AC092337.1-201ENST00000568699 1129 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 AL844908.2-201ENST00000609461 460 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 AC079781.4-201ENST00000641908 219 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.89□□□□□ -0.03
PKNOX1P55347 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.89□□□□□ -0.03
PKNOX1P55347 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
PKNOX1P55347 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.89□□□□□ -0.03
PKNOX1P55347 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.89□□□□□ -0.03
PKNOX1P55347 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.89□□□□□ -0.03
PKNOX1P55347 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.89□□□□□ -0.03
PKNOX1P55347 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PKNOX1P55347 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
PKNOX1P55347 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 LILRP1-201ENST00000444199 1370 ntBASIC14.88□□□□□ -0.03
PKNOX1P55347 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.88□□□□□ -0.03
PKNOX1P55347 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.88□□□□□ -0.03
PKNOX1P55347 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AC004066.1-201ENST00000502488 802 ntBASIC14.88□□□□□ -0.03
PKNOX1P55347 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.88□□□□□ -0.03
PKNOX1P55347 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AL158211.3-201ENST00000607385 239 ntBASIC14.88□□□□□ -0.03
PKNOX1P55347 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.88□□□□□ -0.03
PKNOX1P55347 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.88□□□□□ -0.03
PKNOX1P55347 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PKNOX1P55347 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms