Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.75■□□□□ 0.11
CDH6P55285 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 RNU1-114P-201ENST00000365297 166 ntBASIC15.75■□□□□ 0.11
CDH6P55285 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CDH6P55285 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.75■□□□□ 0.11
CDH6P55285 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.75■□□□□ 0.11
CDH6P55285 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.75■□□□□ 0.11
CDH6P55285 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC15.75■□□□□ 0.11
CDH6P55285 AC140912.1-201ENST00000577171 1054 ntBASIC15.75■□□□□ 0.11
CDH6P55285 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.75■□□□□ 0.11
CDH6P55285 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.75■□□□□ 0.11
CDH6P55285 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.75■□□□□ 0.11
CDH6P55285 AC023090.2-201ENST00000625182 2110 ntBASIC15.75■□□□□ 0.11
CDH6P55285 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CDH6P55285 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH6P55285 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH6P55285 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH6P55285 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CDH6P55285 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CDH6P55285 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.74■□□□□ 0.11
CDH6P55285 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CDH6P55285 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 AC190387.1-201ENST00000551683 408 ntBASIC15.74■□□□□ 0.11
CDH6P55285 CTBP2P3-201ENST00000585629 1255 ntBASIC15.74■□□□□ 0.11
CDH6P55285 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CDH6P55285 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH6P55285 KRT8P14-201ENST00000414254 1442 ntBASIC15.74■□□□□ 0.11
CDH6P55285 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 AL136379.1-201ENST00000623471 2642 ntBASIC15.74■□□□□ 0.11
CDH6P55285 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CDH6P55285 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.74■□□□□ 0.11
CDH6P55285 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CDH6P55285 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CDH6P55285 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CDH6P55285 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CDH6P55285 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.73■□□□□ 0.11
CDH6P55285 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.73■□□□□ 0.11
CDH6P55285 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CDH6P55285 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms