Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 BASP1P1-201ENST00000430708 665 ntBASIC13.34□□□□□ -0.27
CX3CR1P49238 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC13.34□□□□□ -0.27
CX3CR1P49238 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 FAM86LP-201ENST00000478302 853 ntBASIC13.34□□□□□ -0.27
CX3CR1P49238 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.34□□□□□ -0.27
CX3CR1P49238 AC093214.1-201ENST00000511688 1107 ntBASIC13.34□□□□□ -0.27
CX3CR1P49238 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CX3CR1P49238 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 AL360270.3-201ENST00000609118 1348 ntBASIC13.34□□□□□ -0.27
CX3CR1P49238 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
CX3CR1P49238 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CR1P49238 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CR1P49238 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CX3CR1P49238 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.27
CX3CR1P49238 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.33□□□□□ -0.27
CX3CR1P49238 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CX3CR1P49238 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 AC140479.7-201ENST00000636301 2332 ntBASIC13.33□□□□□ -0.28
CX3CR1P49238 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 AC018529.2-202ENST00000611482 3087 ntBASIC13.33□□□□□ -0.28
CX3CR1P49238 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
CX3CR1P49238 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC13.33□□□□□ -0.28
CX3CR1P49238 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.33□□□□□ -0.28
CX3CR1P49238 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.33□□□□□ -0.28
CX3CR1P49238 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.33□□□□□ -0.28
CX3CR1P49238 RARRES2P5-201ENST00000564013 466 ntBASIC13.33□□□□□ -0.28
CX3CR1P49238 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 AL049840.4-201ENST00000602422 811 ntBASIC13.33□□□□□ -0.28
CX3CR1P49238 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CX3CR1P49238 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CR1P49238 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CR1P49238 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CX3CR1P49238 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CX3CR1P49238 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CX3CR1P49238 AL157414.3-201ENST00000624276 1954 ntBASIC13.32□□□□□ -0.28
CX3CR1P49238 MTHFR-210ENST00000641407 2387 ntBASIC13.32□□□□□ -0.28
CX3CR1P49238 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms