Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.38□□□□□ -0.27
SOX2P48431 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SOX2P48431 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SOX2P48431 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
SOX2P48431 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
SOX2P48431 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SOX2P48431 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SOX2P48431 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 AC004461.1-201ENST00000412461 403 ntBASIC13.37□□□□□ -0.27
SOX2P48431 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 GPS2P2-201ENST00000430745 888 ntBASIC13.37□□□□□ -0.27
SOX2P48431 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.37□□□□□ -0.27
SOX2P48431 PGAM5P1-201ENST00000518923 814 ntBASIC13.37□□□□□ -0.27
SOX2P48431 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.37□□□□□ -0.27
SOX2P48431 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SOX2P48431 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX2P48431 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX2P48431 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX2P48431 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.36□□□□□ -0.27
SOX2P48431 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
SOX2P48431 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SOX2P48431 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.36□□□□□ -0.27
SOX2P48431 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX2P48431 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 LILRP1-201ENST00000444199 1370 ntBASIC13.36□□□□□ -0.27
SOX2P48431 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX2P48431 Z97205.2-201ENST00000564697 1639 ntBASIC13.36□□□□□ -0.27
SOX2P48431 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
SOX2P48431 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SOX2P48431 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
SOX2P48431 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX2P48431 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms