Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 MIR661-201ENST00000384842 89 ntBASIC14.28□□□□□ -0.12
RFX3P48380 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.28□□□□□ -0.12
RFX3P48380 SLC7A15P-201ENST00000424028 1363 ntBASIC14.28□□□□□ -0.12
RFX3P48380 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.28□□□□□ -0.12
RFX3P48380 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.28□□□□□ -0.12
RFX3P48380 AC123567.1-201ENST00000548294 1261 ntBASIC14.28□□□□□ -0.12
RFX3P48380 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 LINC00528-201ENST00000600723 2160 ntBASIC14.28□□□□□ -0.12
RFX3P48380 AC000095.1-201ENST00000603208 874 ntBASIC14.28□□□□□ -0.12
RFX3P48380 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 AC007431.3-201ENST00000623221 587 ntBASIC14.28□□□□□ -0.12
RFX3P48380 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.28□□□□□ -0.12
RFX3P48380 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
RFX3P48380 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RFX3P48380 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RFX3P48380 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.27□□□□□ -0.12
RFX3P48380 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.27□□□□□ -0.12
RFX3P48380 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.27□□□□□ -0.12
RFX3P48380 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.27□□□□□ -0.12
RFX3P48380 GRK6P1-201ENST00000400595 1711 ntBASIC14.27□□□□□ -0.12
RFX3P48380 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.27□□□□□ -0.12
RFX3P48380 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
RFX3P48380 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RFX3P48380 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
RFX3P48380 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
RFX3P48380 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
RFX3P48380 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
RFX3P48380 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
RFX3P48380 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.27□□□□□ -0.13
RFX3P48380 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.27□□□□□ -0.13
RFX3P48380 TERF1P3-201ENST00000505638 1227 ntBASIC14.27□□□□□ -0.13
RFX3P48380 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.27□□□□□ -0.13
RFX3P48380 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.27□□□□□ -0.13
RFX3P48380 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.27□□□□□ -0.13
RFX3P48380 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.27□□□□□ -0.13
RFX3P48380 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.27□□□□□ -0.13
RFX3P48380 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.27□□□□□ -0.13
RFX3P48380 AC106881.1-201ENST00000605849 3329 ntBASIC14.27□□□□□ -0.13
RFX3P48380 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
RFX3P48380 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
RFX3P48380 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
RFX3P48380 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
RFX3P48380 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
RFX3P48380 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
RFX3P48380 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.26□□□□□ -0.13
RFX3P48380 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms