Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.84□□□□□ -0.03
CXCL12P48061 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC14.84□□□□□ -0.03
CXCL12P48061 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.84□□□□□ -0.03
CXCL12P48061 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CXCL12P48061 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.84□□□□□ -0.03
CXCL12P48061 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.84□□□□□ -0.03
CXCL12P48061 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.84□□□□□ -0.03
CXCL12P48061 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.84□□□□□ -0.03
CXCL12P48061 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.84□□□□□ -0.03
CXCL12P48061 CYP4F23P-201ENST00000593402 1579 ntBASIC14.84□□□□□ -0.03
CXCL12P48061 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CXCL12P48061 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.84□□□□□ -0.03
CXCL12P48061 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CXCL12P48061 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CXCL12P48061 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.84□□□□□ -0.03
CXCL12P48061 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CXCL12P48061 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CXCL12P48061 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14.84□□□□□ -0.03
CXCL12P48061 PCDH8P1-201ENST00000428983 2773 ntBASIC14.84□□□□□ -0.03
CXCL12P48061 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CXCL12P48061 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.83□□□□□ -0.03
CXCL12P48061 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.83□□□□□ -0.03
CXCL12P48061 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.83□□□□□ -0.03
CXCL12P48061 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.83□□□□□ -0.03
CXCL12P48061 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.83□□□□□ -0.03
CXCL12P48061 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 SALL4P5-201ENST00000419001 1760 ntBASIC14.83□□□□□ -0.03
CXCL12P48061 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CXCL12P48061 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.83□□□□□ -0.04
CXCL12P48061 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.83□□□□□ -0.04
CXCL12P48061 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.83□□□□□ -0.04
CXCL12P48061 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.83□□□□□ -0.04
CXCL12P48061 TSPY25P-201ENST00000429463 745 ntBASIC14.83□□□□□ -0.04
CXCL12P48061 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC14.83□□□□□ -0.04
CXCL12P48061 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CXCL12P48061 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.83□□□□□ -0.04
CXCL12P48061 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.83□□□□□ -0.04
CXCL12P48061 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC14.83□□□□□ -0.04
CXCL12P48061 AC141586.1-203ENST00000567242 366 ntBASIC14.83□□□□□ -0.04
CXCL12P48061 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CXCL12P48061 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.83□□□□□ -0.04
CXCL12P48061 AC127024.7-201ENST00000625101 200 ntBASIC14.83□□□□□ -0.04
CXCL12P48061 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CXCL12P48061 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 AC024909.3-201ENST00000611513 2257 ntBASIC14.83□□□□□ -0.04
CXCL12P48061 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CXCL12P48061 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.83□□□□□ -0.04
CXCL12P48061 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.83□□□□□ -0.04
CXCL12P48061 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
CXCL12P48061 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CXCL12P48061 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CXCL12P48061 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.82□□□□□ -0.04
CXCL12P48061 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CXCL12P48061 AC234644.1-201ENST00000406065 370 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 XBP1P1-201ENST00000436573 652 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.82□□□□□ -0.04
CXCL12P48061 NDUFS6P1-201ENST00000485187 316 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 RN7SL81P-201ENST00000493781 261 ntBASIC14.82□□□□□ -0.04
CXCL12P48061 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms