Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC16.42■□□□□ 0.22
HTTP42858 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.42■□□□□ 0.22
HTTP42858 BCRP4-201ENST00000506079 804 ntBASIC16.42■□□□□ 0.22
HTTP42858 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
HTTP42858 MIR6125-201ENST00000618986 96 ntBASIC16.42■□□□□ 0.22
HTTP42858 SALL4P5-201ENST00000419001 1760 ntBASIC16.42■□□□□ 0.22
HTTP42858 CICP23-201ENST00000605013 2741 ntBASIC16.42■□□□□ 0.22
HTTP42858 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC16.42■□□□□ 0.22
HTTP42858 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC16.42■□□□□ 0.22
HTTP42858 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 AD000864.1-201ENST00000624076 2295 ntBASIC16.42■□□□□ 0.22
HTTP42858 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HTTP42858 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 AC018638.5-201ENST00000450885 754 ntBASIC16.41■□□□□ 0.22
HTTP42858 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC16.41■□□□□ 0.22
HTTP42858 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 AC090136.2-201ENST00000517809 420 ntBASIC16.41■□□□□ 0.22
HTTP42858 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.41■□□□□ 0.22
HTTP42858 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HTTP42858 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 AL512599.1-201ENST00000430724 685 ntBASIC16.41■□□□□ 0.22
HTTP42858 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
HTTP42858 AC084018.2-201ENST00000613093 2607 ntBASIC16.41■□□□□ 0.22
HTTP42858 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HTTP42858 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 PGAM1P11-201ENST00000416729 680 ntBASIC16.41■□□□□ 0.22
HTTP42858 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC16.41■□□□□ 0.22
HTTP42858 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC16.41■□□□□ 0.22
HTTP42858 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC16.41■□□□□ 0.22
HTTP42858 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HTTP42858 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.41■□□□□ 0.22
HTTP42858 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
HTTP42858 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 AC092570.1-201ENST00000414446 469 ntBASIC16.4■□□□□ 0.22
HTTP42858 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC16.4■□□□□ 0.22
HTTP42858 RN7SL582P-201ENST00000491078 279 ntBASIC16.4■□□□□ 0.22
HTTP42858 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 KNOP1P1-201ENST00000542108 989 ntBASIC16.4■□□□□ 0.22
HTTP42858 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC16.4■□□□□ 0.22
HTTP42858 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 AC067931.2-201ENST00000623655 2003 ntBASIC16.4■□□□□ 0.22
HTTP42858 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC16.4■□□□□ 0.22
HTTP42858 BRD7P5-201ENST00000299197 1822 ntBASIC16.4■□□□□ 0.22
HTTP42858 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC16.4■□□□□ 0.22
HTTP42858 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC16.4■□□□□ 0.22
HTTP42858 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.4■□□□□ 0.22
HTTP42858 AC006372.4-201ENST00000624122 1543 ntBASIC16.4■□□□□ 0.22
HTTP42858 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HTTP42858 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.39■□□□□ 0.22
HTTP42858 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
HTTP42858 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HTTP42858 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms