Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 BANF1P1-201ENST00000553684 263 ntBASIC14.49□□□□□ -0.09
MSX2P35548 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
MSX2P35548 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.49□□□□□ -0.09
MSX2P35548 AC015910.1-201ENST00000579400 975 ntBASIC14.49□□□□□ -0.09
MSX2P35548 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.49□□□□□ -0.09
MSX2P35548 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 AC025181.2-201ENST00000606994 802 ntBASIC14.49□□□□□ -0.09
MSX2P35548 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 UXT-AS1-201ENST00000590504 1525 ntBASIC14.49□□□□□ -0.09
MSX2P35548 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 AC016397.2-201ENST00000624848 1985 ntBASIC14.49□□□□□ -0.09
MSX2P35548 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
MSX2P35548 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
MSX2P35548 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
MSX2P35548 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 TCAF1P1-201ENST00000414990 2232 ntBASIC14.48□□□□□ -0.09
MSX2P35548 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 TPT1P11-201ENST00000458482 498 ntBASIC14.48□□□□□ -0.09
MSX2P35548 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 AC079140.1-201ENST00000508039 487 ntBASIC14.48□□□□□ -0.09
MSX2P35548 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC14.48□□□□□ -0.09
MSX2P35548 IGHV3-62-201ENST00000520057 340 ntBASIC14.48□□□□□ -0.09
MSX2P35548 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 RARRES2P9-201ENST00000565168 469 ntBASIC14.48□□□□□ -0.09
MSX2P35548 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 AC092902.6-201ENST00000641783 218 ntBASIC14.48□□□□□ -0.09
MSX2P35548 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.48□□□□□ -0.09
MSX2P35548 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
MSX2P35548 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
MSX2P35548 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
MSX2P35548 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
MSX2P35548 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms