Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.14
BDNFP23560 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
BDNFP23560 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.89■□□□□ 0.13
BDNFP23560 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.89■□□□□ 0.13
BDNFP23560 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
BDNFP23560 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 AC108725.1-201ENST00000495472 409 ntBASIC15.89■□□□□ 0.13
BDNFP23560 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
BDNFP23560 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.89■□□□□ 0.13
BDNFP23560 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
BDNFP23560 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.89■□□□□ 0.13
BDNFP23560 EEF1DP1-201ENST00000585891 896 ntBASIC15.89■□□□□ 0.13
BDNFP23560 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.89■□□□□ 0.13
BDNFP23560 AC091271.1-201ENST00000611877 1162 ntBASIC15.89■□□□□ 0.13
BDNFP23560 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 AP002414.2-201ENST00000591780 3365 ntBASIC15.89■□□□□ 0.13
BDNFP23560 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
BDNFP23560 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.89■□□□□ 0.13
BDNFP23560 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
BDNFP23560 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
BDNFP23560 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
BDNFP23560 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 AL023775.1-201ENST00000454907 1746 ntBASIC15.88■□□□□ 0.13
BDNFP23560 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
BDNFP23560 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.88■□□□□ 0.13
BDNFP23560 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.88■□□□□ 0.13
BDNFP23560 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
BDNFP23560 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.88■□□□□ 0.13
BDNFP23560 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.88■□□□□ 0.13
BDNFP23560 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.88■□□□□ 0.13
BDNFP23560 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.88■□□□□ 0.13
BDNFP23560 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.88■□□□□ 0.13
BDNFP23560 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.88■□□□□ 0.13
BDNFP23560 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.88■□□□□ 0.13
BDNFP23560 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 AL136379.1-201ENST00000623471 2642 ntBASIC15.88■□□□□ 0.13
BDNFP23560 AC020910.5-201ENST00000623668 1865 ntBASIC15.88■□□□□ 0.13
BDNFP23560 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 ZBED1P1-201ENST00000502364 1930 ntBASIC15.88■□□□□ 0.13
BDNFP23560 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.88■□□□□ 0.13
BDNFP23560 AC104640.1-201ENST00000562617 2109 ntBASIC15.88■□□□□ 0.13
BDNFP23560 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.88■□□□□ 0.13
BDNFP23560 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BDNFP23560 ACE3P-201ENST00000423435 1973 ntBASIC15.87■□□□□ 0.13
BDNFP23560 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
BDNFP23560 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BDNFP23560 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms