Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 AL157414.3-201ENST00000624276 1954 ntBASIC15.09■□□□□ 0.01
MSH3P20585 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
MSH3P20585 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
MSH3P20585 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
MSH3P20585 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
MSH3P20585 KRT8P14-201ENST00000414254 1442 ntBASIC15.09■□□□□ 0.01
MSH3P20585 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
MSH3P20585 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.08■□□□□ 0.01
MSH3P20585 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
MSH3P20585 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSH3P20585 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
MSH3P20585 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.08■□□□□ 0.01
MSH3P20585 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0.01
MSH3P20585 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.08■□□□□ 0
MSH3P20585 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.08■□□□□ 0
MSH3P20585 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 CICP23-201ENST00000605013 2741 ntBASIC15.08■□□□□ 0
MSH3P20585 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.08■□□□□ 0
MSH3P20585 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.08■□□□□ 0
MSH3P20585 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.08■□□□□ 0
MSH3P20585 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.08■□□□□ 0
MSH3P20585 AC012441.1-201ENST00000446669 685 ntBASIC15.08■□□□□ 0
MSH3P20585 AL355864.2-201ENST00000447420 863 ntBASIC15.08■□□□□ 0
MSH3P20585 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.08■□□□□ 0
MSH3P20585 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.08■□□□□ 0
MSH3P20585 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.08■□□□□ 0
MSH3P20585 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.08■□□□□ 0
MSH3P20585 AL035252.4-201ENST00000624174 288 ntBASIC15.08■□□□□ 0
MSH3P20585 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
MSH3P20585 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.08■□□□□ 0
MSH3P20585 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.08■□□□□ 0
MSH3P20585 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
MSH3P20585 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
MSH3P20585 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
MSH3P20585 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 MSTO2P-201ENST00000314835 1709 ntBASIC15.07■□□□□ 0
MSH3P20585 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
MSH3P20585 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.07■□□□□ 0
MSH3P20585 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.07■□□□□ 0
MSH3P20585 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
MSH3P20585 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.07■□□□□ 0
MSH3P20585 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms