Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TPM1P09493 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
TPM1P09493 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TPM1P09493 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.74■□□□□ 0.27
TPM1P09493 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM1P09493 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 AC097359.2-201ENST00000604992 2389 ntBASIC16.73■□□□□ 0.27
TPM1P09493 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC16.73■□□□□ 0.27
TPM1P09493 AC092053.3-201ENST00000641308 4975 ntBASIC16.73■□□□□ 0.27
TPM1P09493 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
TPM1P09493 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TPM1P09493 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 AC104457.1-201ENST00000401024 814 ntBASIC16.73■□□□□ 0.27
TPM1P09493 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 HTR5BP-201ENST00000430851 1154 ntBASIC16.73■□□□□ 0.27
TPM1P09493 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 AL133215.2-201ENST00000609242 977 ntBASIC16.73■□□□□ 0.27
TPM1P09493 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.73■□□□□ 0.27
TPM1P09493 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.73■□□□□ 0.27
TPM1P09493 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TPM1P09493 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 KRT18P43-201ENST00000469825 1281 ntBASIC16.72■□□□□ 0.27
TPM1P09493 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.72■□□□□ 0.27
TPM1P09493 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 MTDHP5-201ENST00000598980 586 ntBASIC16.72■□□□□ 0.27
TPM1P09493 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TPM1P09493 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TPM1P09493 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.72■□□□□ 0.27
TPM1P09493 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 Z97205.2-201ENST00000564697 1639 ntBASIC16.71■□□□□ 0.27
TPM1P09493 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TPM1P09493 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TPM1P09493 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
TPM1P09493 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms