Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 MIR557-201ENST00000385239 98 ntBASIC13.63□□□□□ -0.23
SPTA1P02549 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
SPTA1P02549 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.63□□□□□ -0.23
SPTA1P02549 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SPTA1P02549 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SPTA1P02549 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SPTA1P02549 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.62□□□□□ -0.23
SPTA1P02549 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC13.62□□□□□ -0.23
SPTA1P02549 SOD2-202ENST00000367054 815 ntTSL 2 BASIC13.62□□□□□ -0.23
SPTA1P02549 AL627231.1-201ENST00000394467 1125 ntBASIC13.62□□□□□ -0.23
SPTA1P02549 TSPY25P-201ENST00000429463 745 ntBASIC13.62□□□□□ -0.23
SPTA1P02549 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC13.62□□□□□ -0.23
SPTA1P02549 AC012441.2-201ENST00000444843 739 ntBASIC13.62□□□□□ -0.23
SPTA1P02549 AC026410.1-201ENST00000507366 1101 ntBASIC13.62□□□□□ -0.23
SPTA1P02549 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.62□□□□□ -0.23
SPTA1P02549 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC13.62□□□□□ -0.23
SPTA1P02549 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC13.62□□□□□ -0.23
SPTA1P02549 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC13.62□□□□□ -0.23
SPTA1P02549 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC13.62□□□□□ -0.23
SPTA1P02549 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC13.62□□□□□ -0.23
SPTA1P02549 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 AC084364.1-201ENST00000551967 1556 ntBASIC13.62□□□□□ -0.23
SPTA1P02549 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SPTA1P02549 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.62□□□□□ -0.23
SPTA1P02549 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.61□□□□□ -0.23
SPTA1P02549 GCSHP3-201ENST00000431120 391 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
SPTA1P02549 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 SNORD3B-2-202ENST00000571722 791 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms