Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC12.24□□□□□ -0.45
HMGB3O15347 TPM1-218ENST00000559281 851 ntTSL 5 BASIC12.24□□□□□ -0.45
HMGB3O15347 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 NME3-204ENST00000563498 920 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 MIR4751-201ENST00000578027 74 ntBASIC12.24□□□□□ -0.45
HMGB3O15347 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.24□□□□□ -0.45
HMGB3O15347 AL450472.2-201ENST00000603663 1156 ntBASIC12.24□□□□□ -0.45
HMGB3O15347 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC12.24□□□□□ -0.45
HMGB3O15347 RAD1-203ENST00000382038 5770 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 ZEB2-239ENST00000637045 9091 ntTSL 5 BASIC12.24□□□□□ -0.45
HMGB3O15347 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 B3GAT2-202ENST00000615536 5206 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HMGB3O15347 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.24□□□□□ -0.45
HMGB3O15347 NEPRO-201ENST00000314400 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 REXO1L2P-201ENST00000425429 2069 ntBASIC12.23□□□□□ -0.45
HMGB3O15347 MBLAC2-202ENST00000514906 1936 ntBASIC12.23□□□□□ -0.45
HMGB3O15347 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 AC006030.1-201ENST00000451608 5059 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 RASGRF2-201ENST00000265080 8167 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC12.23□□□□□ -0.45
HMGB3O15347 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.23□□□□□ -0.45
HMGB3O15347 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.23□□□□□ -0.45
HMGB3O15347 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HMGB3O15347 TACC2-228ENST00000515273 9245 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.22□□□□□ -0.45
HMGB3O15347 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 LAMA4-207ENST00000424408 5983 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HMGB3O15347 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HMGB3O15347 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 CENPM-204ENST00000402420 688 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.22□□□□□ -0.45
HMGB3O15347 COPS8-203ENST00000409334 794 ntTSL 5 BASIC12.22□□□□□ -0.45
HMGB3O15347 AC109635.5-201ENST00000533593 962 ntBASIC12.22□□□□□ -0.45
HMGB3O15347 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms