Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.94□□□□□ -0.34
SDCBPO00560 KLF2P3-201ENST00000451977 1087 ntBASIC12.94□□□□□ -0.34
SDCBPO00560 HLA-V-204ENST00000476601 1289 ntBASIC12.94□□□□□ -0.34
SDCBPO00560 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.94□□□□□ -0.34
SDCBPO00560 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.94□□□□□ -0.34
SDCBPO00560 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
SDCBPO00560 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.94□□□□□ -0.34
SDCBPO00560 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.94□□□□□ -0.34
SDCBPO00560 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.94□□□□□ -0.34
SDCBPO00560 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.94□□□□□ -0.34
SDCBPO00560 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.94□□□□□ -0.34
SDCBPO00560 SPDYE12P-201ENST00000618416 771 ntBASIC12.94□□□□□ -0.34
SDCBPO00560 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.94□□□□□ -0.34
SDCBPO00560 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC12.94□□□□□ -0.34
SDCBPO00560 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
SDCBPO00560 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC12.94□□□□□ -0.34
SDCBPO00560 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SDCBPO00560 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SDCBPO00560 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
SDCBPO00560 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SDCBPO00560 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 AL139400.1-201ENST00000366220 510 ntBASIC12.93□□□□□ -0.34
SDCBPO00560 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 FAM86GP-201ENST00000448322 971 ntBASIC12.93□□□□□ -0.34
SDCBPO00560 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 RN7SL618P-201ENST00000477850 296 ntBASIC12.93□□□□□ -0.34
SDCBPO00560 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 AC069120.2-201ENST00000524091 540 ntBASIC12.93□□□□□ -0.34
SDCBPO00560 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.93□□□□□ -0.34
SDCBPO00560 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.93□□□□□ -0.34
SDCBPO00560 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 AC073592.8-201ENST00000624126 511 ntBASIC12.93□□□□□ -0.34
SDCBPO00560 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.93□□□□□ -0.34
SDCBPO00560 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
SDCBPO00560 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
SDCBPO00560 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SDCBPO00560 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms