Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC01558Q9Y6Z2 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 AC004812.2-201ENST00000611079 2094 ntBASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
LINC01558Q9Y6Z2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 AC142472.1-201ENST00000612013 1741 ntBASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
LINC01558Q9Y6Z2 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC01558Q9Y6Z2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC01558Q9Y6Z2 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
LINC01558Q9Y6Z2 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
LINC01558Q9Y6Z2 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC01558Q9Y6Z2 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 EML3-217ENST00000531557 2509 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC01558Q9Y6Z2 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 TERT-206ENST00000508104 2486 ntTSL 5 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC12.01□□□□□ -0.49
LINC01558Q9Y6Z2 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC12□□□□□ -0.49
LINC01558Q9Y6Z2 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC11.99□□□□□ -0.49
LINC01558Q9Y6Z2 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC01558Q9Y6Z2 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC01558Q9Y6Z2 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
LINC01558Q9Y6Z2 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms