Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.87■■□□□ 1.41
AP4E1Q9UPM8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
AP4E1Q9UPM8 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.87■■□□□ 1.41
AP4E1Q9UPM8 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
AP4E1Q9UPM8 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.86■■□□□ 1.41
AP4E1Q9UPM8 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
AP4E1Q9UPM8 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
AP4E1Q9UPM8 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.85■■□□□ 1.41
AP4E1Q9UPM8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
AP4E1Q9UPM8 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.85■■□□□ 1.41
AP4E1Q9UPM8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.85■■□□□ 1.41
AP4E1Q9UPM8 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 AC137630.3-201ENST00000607245 391 ntBASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
AP4E1Q9UPM8 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
AP4E1Q9UPM8 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.83■■□□□ 1.4
AP4E1Q9UPM8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
AP4E1Q9UPM8 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
AP4E1Q9UPM8 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
AP4E1Q9UPM8 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
AP4E1Q9UPM8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
AP4E1Q9UPM8 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
AP4E1Q9UPM8 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
AP4E1Q9UPM8 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
AP4E1Q9UPM8 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.8■■□□□ 1.4
AP4E1Q9UPM8 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.79■■□□□ 1.4
AP4E1Q9UPM8 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.78■■□□□ 1.4
AP4E1Q9UPM8 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 BX664725.1-201ENST00000438252 379 ntBASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 AC004448.1-201ENST00000458332 883 ntBASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 AL451085.2-201ENST00000605085 799 ntBASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
AP4E1Q9UPM8 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
AP4E1Q9UPM8 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
AP4E1Q9UPM8 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 209 ms