Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL12A1Q99715 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL12A1Q99715 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.44■□□□□ 0.86
COL12A1Q99715 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL12A1Q99715 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.44■□□□□ 0.86
COL12A1Q99715 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL12A1Q99715 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL12A1Q99715 AL355802.2-201ENST00000402069 882 ntBASIC20.43■□□□□ 0.86
COL12A1Q99715 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL12A1Q99715 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.43■□□□□ 0.86
COL12A1Q99715 CCDC92B-201ENST00000575506 885 ntBASIC20.43■□□□□ 0.86
COL12A1Q99715 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
COL12A1Q99715 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL12A1Q99715 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL12A1Q99715 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.42■□□□□ 0.86
COL12A1Q99715 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.42■□□□□ 0.86
COL12A1Q99715 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.42■□□□□ 0.86
COL12A1Q99715 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
COL12A1Q99715 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.42■□□□□ 0.86
COL12A1Q99715 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.42■□□□□ 0.86
COL12A1Q99715 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL12A1Q99715 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.42■□□□□ 0.86
COL12A1Q99715 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.42■□□□□ 0.86
COL12A1Q99715 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.42■□□□□ 0.86
COL12A1Q99715 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL12A1Q99715 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL12A1Q99715 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.41■□□□□ 0.86
COL12A1Q99715 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.41■□□□□ 0.86
COL12A1Q99715 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.41■□□□□ 0.86
COL12A1Q99715 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
COL12A1Q99715 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL12A1Q99715 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL12A1Q99715 CROCCP5-201ENST00000436658 830 ntBASIC20.4■□□□□ 0.86
COL12A1Q99715 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.4■□□□□ 0.86
COL12A1Q99715 AC099791.2-201ENST00000605725 427 ntBASIC20.4■□□□□ 0.86
COL12A1Q99715 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.4■□□□□ 0.86
COL12A1Q99715 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.4■□□□□ 0.86
COL12A1Q99715 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL12A1Q99715 AC006015.1-201ENST00000429970 570 ntBASIC20.4■□□□□ 0.86
COL12A1Q99715 AC136469.2-201ENST00000623944 1028 ntBASIC20.4■□□□□ 0.86
COL12A1Q99715 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL12A1Q99715 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.39■□□□□ 0.85
COL12A1Q99715 AL499627.2-201ENST00000606283 725 ntBASIC20.39■□□□□ 0.85
COL12A1Q99715 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.39■□□□□ 0.85
COL12A1Q99715 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL12A1Q99715 AC005703.6-201ENST00000623265 1329 ntBASIC20.38■□□□□ 0.85
COL12A1Q99715 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL12A1Q99715 KRT18P14-201ENST00000534205 1250 ntBASIC20.38■□□□□ 0.85
COL12A1Q99715 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.38■□□□□ 0.85
COL12A1Q99715 NTF6G-201ENST00000591094 616 ntBASIC20.38■□□□□ 0.85
COL12A1Q99715 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL12A1Q99715 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL12A1Q99715 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.38■□□□□ 0.85
COL12A1Q99715 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL12A1Q99715 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.38■□□□□ 0.85
COL12A1Q99715 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
COL12A1Q99715 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.38■□□□□ 0.85
COL12A1Q99715 AC008687.6-201ENST00000596318 630 ntBASIC20.38■□□□□ 0.85
COL12A1Q99715 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.37■□□□□ 0.85
COL12A1Q99715 TSPY26P-201ENST00000476365 1326 ntBASIC20.37■□□□□ 0.85
COL12A1Q99715 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.37■□□□□ 0.85
COL12A1Q99715 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.37■□□□□ 0.85
COL12A1Q99715 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL12A1Q99715 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL12A1Q99715 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
COL12A1Q99715 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.37■□□□□ 0.85
COL12A1Q99715 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.37■□□□□ 0.85
COL12A1Q99715 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.37■□□□□ 0.85
COL12A1Q99715 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL12A1Q99715 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.36■□□□□ 0.85
COL12A1Q99715 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.36■□□□□ 0.85
COL12A1Q99715 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.36■□□□□ 0.85
COL12A1Q99715 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL12A1Q99715 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL12A1Q99715 NCF1B-203ENST00000435988 1254 ntBASIC20.36■□□□□ 0.85
COL12A1Q99715 AC026185.1-201ENST00000445748 174 ntBASIC20.36■□□□□ 0.85
COL12A1Q99715 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL12A1Q99715 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL12A1Q99715 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.35■□□□□ 0.85
COL12A1Q99715 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.35■□□□□ 0.85
COL12A1Q99715 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL12A1Q99715 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
COL12A1Q99715 C17orf82-201ENST00000623772 1530 ntBASIC20.35■□□□□ 0.85
COL12A1Q99715 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.35■□□□□ 0.85
COL12A1Q99715 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL12A1Q99715 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL12A1Q99715 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL12A1Q99715 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL12A1Q99715 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
COL12A1Q99715 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL12A1Q99715 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL12A1Q99715 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
COL12A1Q99715 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.34■□□□□ 0.85
COL12A1Q99715 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms