Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
ATG4AQ8WYN0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 AL592295.1-201ENST00000400984 884 ntBASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
ATG4AQ8WYN0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
ATG4AQ8WYN0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 AC129492.7-201ENST00000622992 756 ntBASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
ATG4AQ8WYN0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
ATG4AQ8WYN0 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC23.81■■□□□ 1.4
ATG4AQ8WYN0 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
ATG4AQ8WYN0 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
ATG4AQ8WYN0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 KRT18P60-201ENST00000312876 1297 ntBASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
ATG4AQ8WYN0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 LONRF2P2-201ENST00000439212 571 ntBASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
ATG4AQ8WYN0 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.78■■□□□ 1.4
ATG4AQ8WYN0 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.77■■□□□ 1.4
ATG4AQ8WYN0 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.76■■□□□ 1.39
ATG4AQ8WYN0 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.75■■□□□ 1.39
ATG4AQ8WYN0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
ATG4AQ8WYN0 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
ATG4AQ8WYN0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
ATG4AQ8WYN0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
ATG4AQ8WYN0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
ATG4AQ8WYN0 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
ATG4AQ8WYN0 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.73■■□□□ 1.39
ATG4AQ8WYN0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms