Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXA1P55317 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXA1P55317 LONRF2P2-201ENST00000439212 571 ntBASIC22.31■■□□□ 1.16
FOXA1P55317 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
FOXA1P55317 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.3■■□□□ 1.16
FOXA1P55317 KRT18P60-201ENST00000312876 1297 ntBASIC22.3■■□□□ 1.16
FOXA1P55317 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
FOXA1P55317 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.3■■□□□ 1.16
FOXA1P55317 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
FOXA1P55317 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
FOXA1P55317 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
FOXA1P55317 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
FOXA1P55317 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
FOXA1P55317 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
FOXA1P55317 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.29■■□□□ 1.16
FOXA1P55317 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
FOXA1P55317 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
FOXA1P55317 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
FOXA1P55317 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
FOXA1P55317 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.28■■□□□ 1.16
FOXA1P55317 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
FOXA1P55317 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.28■■□□□ 1.16
FOXA1P55317 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
FOXA1P55317 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
FOXA1P55317 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.27■■□□□ 1.16
FOXA1P55317 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.27■■□□□ 1.16
FOXA1P55317 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.27■■□□□ 1.16
FOXA1P55317 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
FOXA1P55317 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.27■■□□□ 1.16
FOXA1P55317 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
FOXA1P55317 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
FOXA1P55317 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
FOXA1P55317 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.26■■□□□ 1.15
FOXA1P55317 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.26■■□□□ 1.15
FOXA1P55317 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
FOXA1P55317 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.25■■□□□ 1.15
FOXA1P55317 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.25■■□□□ 1.15
FOXA1P55317 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.25■■□□□ 1.15
FOXA1P55317 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
FOXA1P55317 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
FOXA1P55317 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
FOXA1P55317 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.24■■□□□ 1.15
FOXA1P55317 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
FOXA1P55317 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.24■■□□□ 1.15
FOXA1P55317 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
FOXA1P55317 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
FOXA1P55317 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
FOXA1P55317 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
FOXA1P55317 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
FOXA1P55317 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.24■■□□□ 1.15
FOXA1P55317 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.23■■□□□ 1.15
FOXA1P55317 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.23■■□□□ 1.15
FOXA1P55317 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.23■■□□□ 1.15
FOXA1P55317 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
FOXA1P55317 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.23■■□□□ 1.15
FOXA1P55317 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
FOXA1P55317 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.23■■□□□ 1.15
FOXA1P55317 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
FOXA1P55317 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
FOXA1P55317 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
FOXA1P55317 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
FOXA1P55317 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
FOXA1P55317 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
FOXA1P55317 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
FOXA1P55317 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
FOXA1P55317 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.22■■□□□ 1.15
FOXA1P55317 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
FOXA1P55317 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
FOXA1P55317 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
FOXA1P55317 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
FOXA1P55317 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
FOXA1P55317 ANOS2P-203ENST00000472227 1816 ntBASIC22.21■■□□□ 1.15
FOXA1P55317 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
FOXA1P55317 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms