Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DPB1P04440 HLA-L-211ENST00000482052 1765 ntBASIC20.57■□□□□ 0.88
HLA-DPB1P04440 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DPB1P04440 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 U85056.1-201ENST00000616429 682 ntBASIC20.56■□□□□ 0.88
HLA-DPB1P04440 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DPB1P04440 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 ABHD17AP5-201ENST00000580133 923 ntBASIC20.55■□□□□ 0.88
HLA-DPB1P04440 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DPB1P04440 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HLA-DPB1P04440 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 AL592293.1-201ENST00000502889 1188 ntBASIC20.53■□□□□ 0.88
HLA-DPB1P04440 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.53■□□□□ 0.88
HLA-DPB1P04440 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.52■□□□□ 0.88
HLA-DPB1P04440 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DPB1P04440 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 AC233723.2-201ENST00000623798 2106 ntBASIC20.5■□□□□ 0.87
HLA-DPB1P04440 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DPB1P04440 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DPB1P04440 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DPB1P04440 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HLA-DPB1P04440 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HLA-DPB1P04440 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.47■□□□□ 0.87
HLA-DPB1P04440 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HLA-DPB1P04440 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms