Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
COL1A1P02452 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
COL1A1P02452 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC28.01■■■□□ 2.07
COL1A1P02452 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC28■■■□□ 2.07
COL1A1P02452 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL1A1P02452 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
COL1A1P02452 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC28■■■□□ 2.07
COL1A1P02452 AL031432.3-201ENST00000607698 485 ntBASIC28■■■□□ 2.07
COL1A1P02452 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL1A1P02452 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC28■■■□□ 2.07
COL1A1P02452 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL1A1P02452 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
COL1A1P02452 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28■■■□□ 2.07
COL1A1P02452 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL1A1P02452 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL1A1P02452 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
COL1A1P02452 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC27.99■■■□□ 2.07
COL1A1P02452 AC142381.2-201ENST00000566120 298 ntBASIC27.99■■■□□ 2.07
COL1A1P02452 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC27.98■■■□□ 2.07
COL1A1P02452 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL1A1P02452 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL1A1P02452 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL1A1P02452 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC27.98■■■□□ 2.07
COL1A1P02452 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL1A1P02452 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
COL1A1P02452 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
COL1A1P02452 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC27.97■■■□□ 2.07
COL1A1P02452 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC27.97■■■□□ 2.07
COL1A1P02452 PBX2P1-201ENST00000493219 1291 ntBASIC27.97■■■□□ 2.07
COL1A1P02452 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
COL1A1P02452 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
COL1A1P02452 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.96■■■□□ 2.07
COL1A1P02452 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
COL1A1P02452 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
COL1A1P02452 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
COL1A1P02452 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC27.95■■■□□ 2.07
COL1A1P02452 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC27.95■■■□□ 2.07
COL1A1P02452 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
COL1A1P02452 SUDS3P1-201ENST00000505831 966 ntBASIC27.95■■■□□ 2.07
COL1A1P02452 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC27.95■■■□□ 2.07
COL1A1P02452 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
COL1A1P02452 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
COL1A1P02452 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
COL1A1P02452 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC27.95■■■□□ 2.06
COL1A1P02452 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
COL1A1P02452 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC27.95■■■□□ 2.06
COL1A1P02452 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC27.95■■■□□ 2.06
COL1A1P02452 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL1A1P02452 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC27.94■■■□□ 2.06
COL1A1P02452 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC27.94■■■□□ 2.06
COL1A1P02452 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
COL1A1P02452 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
COL1A1P02452 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC27.94■■■□□ 2.06
COL1A1P02452 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL1A1P02452 HLA-L-211ENST00000482052 1765 ntBASIC27.93■■■□□ 2.06
COL1A1P02452 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL1A1P02452 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
COL1A1P02452 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
COL1A1P02452 AC026271.2-201ENST00000428091 497 ntBASIC27.93■■■□□ 2.06
COL1A1P02452 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.93■■■□□ 2.06
COL1A1P02452 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.93■■■□□ 2.06
COL1A1P02452 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 AC135279.3-201ENST00000610945 1311 ntBASIC27.92■■■□□ 2.06
COL1A1P02452 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC27.92■■■□□ 2.06
COL1A1P02452 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL1A1P02452 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC27.91■■■□□ 2.06
COL1A1P02452 AL136162.1-201ENST00000607711 1078 ntBASIC27.91■■■□□ 2.06
COL1A1P02452 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC27.91■■■□□ 2.06
COL1A1P02452 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC27.91■■■□□ 2.06
COL1A1P02452 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL1A1P02452 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL1A1P02452 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.9■■■□□ 2.06
COL1A1P02452 UNC93B3-201ENST00000308076 687 ntBASIC27.9■■■□□ 2.06
COL1A1P02452 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC27.9■■■□□ 2.06
COL1A1P02452 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL1A1P02452 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL1A1P02452 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL1A1P02452 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL1A1P02452 AC005703.6-201ENST00000623265 1329 ntBASIC27.9■■■□□ 2.06
COL1A1P02452 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC27.9■■■□□ 2.06
COL1A1P02452 AC022211.4-201ENST00000625094 2161 ntBASIC27.9■■■□□ 2.06
COL1A1P02452 EDA-201ENST00000338901 1233 ntBASIC27.89■■■□□ 2.06
COL1A1P02452 STK32C-205ENST00000456004 607 ntTSL 2 BASIC27.89■■■□□ 2.06
COL1A1P02452 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL1A1P02452 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
COL1A1P02452 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL1A1P02452 LGR4-203ENST00000480977 492 ntTSL 2 BASIC27.89■■■□□ 2.05
COL1A1P02452 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC27.89■■■□□ 2.05
COL1A1P02452 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL1A1P02452 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC27.88■■■□□ 2.05
COL1A1P02452 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC27.88■■■□□ 2.05
COL1A1P02452 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC27.88■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms