Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC137630.3-201ENST00000607245 391 ntBASIC21.79■■□□□ 1.08
PROM1O43490 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PROM1O43490 AL161729.1-201ENST00000604104 1402 ntBASIC21.79■■□□□ 1.08
PROM1O43490 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.79■■□□□ 1.08
PROM1O43490 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PROM1O43490 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PROM1O43490 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PROM1O43490 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
PROM1O43490 AL022069.1-201ENST00000568025 1636 ntBASIC21.78■■□□□ 1.08
PROM1O43490 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.78■■□□□ 1.08
PROM1O43490 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.78■■□□□ 1.08
PROM1O43490 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PROM1O43490 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.78■■□□□ 1.08
PROM1O43490 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PROM1O43490 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.78■■□□□ 1.08
PROM1O43490 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PROM1O43490 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.77■■□□□ 1.08
PROM1O43490 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 AC131274.2-201ENST00000580697 1507 ntBASIC21.77■■□□□ 1.08
PROM1O43490 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
PROM1O43490 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PROM1O43490 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.77■■□□□ 1.08
PROM1O43490 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.77■■□□□ 1.08
PROM1O43490 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PROM1O43490 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
PROM1O43490 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PROM1O43490 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PROM1O43490 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PROM1O43490 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.76■■□□□ 1.07
PROM1O43490 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
PROM1O43490 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.76■■□□□ 1.07
PROM1O43490 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PROM1O43490 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PROM1O43490 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.75■■□□□ 1.07
PROM1O43490 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PROM1O43490 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
PROM1O43490 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PROM1O43490 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PROM1O43490 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
PROM1O43490 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PROM1O43490 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PROM1O43490 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PROM1O43490 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PROM1O43490 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PROM1O43490 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.74■■□□□ 1.07
PROM1O43490 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PROM1O43490 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
PROM1O43490 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
PROM1O43490 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PROM1O43490 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PROM1O43490 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.73■■□□□ 1.07
PROM1O43490 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PROM1O43490 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.73■■□□□ 1.07
PROM1O43490 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.73■■□□□ 1.07
PROM1O43490 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PROM1O43490 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
PROM1O43490 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
PROM1O43490 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.73■■□□□ 1.07
PROM1O43490 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.73■■□□□ 1.07
PROM1O43490 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
PROM1O43490 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PROM1O43490 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PROM1O43490 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.72■■□□□ 1.07
PROM1O43490 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.71■■□□□ 1.07
PROM1O43490 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.71■■□□□ 1.07
PROM1O43490 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
PROM1O43490 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PROM1O43490 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PROM1O43490 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PROM1O43490 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PROM1O43490 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.71■■□□□ 1.07
PROM1O43490 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.71■■□□□ 1.07
PROM1O43490 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PROM1O43490 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.07
PROM1O43490 AL451085.2-201ENST00000605085 799 ntBASIC21.7■■□□□ 1.06
PROM1O43490 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PROM1O43490 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.7■■□□□ 1.06
PROM1O43490 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.7■■□□□ 1.06
PROM1O43490 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PROM1O43490 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PROM1O43490 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 BX664725.1-201ENST00000438252 379 ntBASIC21.69■■□□□ 1.06
PROM1O43490 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms