Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC27.57■■■□□ 2
FOXN1O15353 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.57■■■□□ 2
FOXN1O15353 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.57■■■□□ 2
FOXN1O15353 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.57■■■□□ 2
FOXN1O15353 SF1-220ENST00000626028 704 ntTSL 2 BASIC27.57■■■□□ 2
FOXN1O15353 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
FOXN1O15353 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
FOXN1O15353 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.56■■■□□ 2
FOXN1O15353 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
FOXN1O15353 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC27.56■■■□□ 2
FOXN1O15353 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
FOXN1O15353 DUX4L19-201ENST00000557448 1267 ntBASIC27.56■■■□□ 2
FOXN1O15353 AC027682.1-201ENST00000562846 899 ntBASIC27.56■■■□□ 2
FOXN1O15353 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
FOXN1O15353 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.55■■■□□ 2
FOXN1O15353 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.55■■■□□ 2
FOXN1O15353 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC27.55■■■□□ 2
FOXN1O15353 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC27.55■■■□□ 2
FOXN1O15353 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC27.55■■■□□ 2
FOXN1O15353 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC27.55■■■□□ 2
FOXN1O15353 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC27.55■■■□□ 2
FOXN1O15353 AC011551.1-201ENST00000614101 683 ntBASIC27.55■■■□□ 2
FOXN1O15353 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.55■■■□□ 2
FOXN1O15353 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
FOXN1O15353 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
FOXN1O15353 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.54■■■□□ 2
FOXN1O15353 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
FOXN1O15353 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC27.54■■■□□ 2
FOXN1O15353 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.54■■■□□ 2
FOXN1O15353 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
FOXN1O15353 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
FOXN1O15353 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.54■■■□□ 2
FOXN1O15353 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC27.54■■■□□ 2
FOXN1O15353 VPS53-216ENST00000574029 585 ntTSL 4 BASIC27.54■■■□□ 2
FOXN1O15353 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC27.54■■■□□ 2
FOXN1O15353 AC020928.2-201ENST00000588717 2197 ntBASIC27.54■■■□□ 2
FOXN1O15353 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.54■■■□□ 2
FOXN1O15353 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
FOXN1O15353 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
FOXN1O15353 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
FOXN1O15353 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
FOXN1O15353 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
FOXN1O15353 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC27.53■■■□□ 2
FOXN1O15353 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
FOXN1O15353 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
FOXN1O15353 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.52■■■□□ 2
FOXN1O15353 PTMA-205ENST00000410064 814 ntTSL 2 BASIC27.52■■■□□ 2
FOXN1O15353 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC27.52■■■□□ 2
FOXN1O15353 AC066615.1-201ENST00000640911 628 ntBASIC27.52■■■□□ 2
FOXN1O15353 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
FOXN1O15353 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
FOXN1O15353 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
FOXN1O15353 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
FOXN1O15353 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
FOXN1O15353 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC27.51■■□□□ 1.99
FOXN1O15353 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC27.51■■□□□ 1.99
FOXN1O15353 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
FOXN1O15353 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
FOXN1O15353 AF131216.4-201ENST00000638924 1588 ntBASIC27.51■■□□□ 1.99
FOXN1O15353 ERN1-208ENST00000606895 2068 ntBASIC27.5■■□□□ 1.99
FOXN1O15353 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
FOXN1O15353 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.5■■□□□ 1.99
FOXN1O15353 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
FOXN1O15353 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC27.5■■□□□ 1.99
FOXN1O15353 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC27.5■■□□□ 1.99
FOXN1O15353 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
FOXN1O15353 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
FOXN1O15353 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
FOXN1O15353 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC27.49■■□□□ 1.99
FOXN1O15353 AC008764.7-201ENST00000593779 1081 ntBASIC27.49■■□□□ 1.99
FOXN1O15353 AL031602.1-201ENST00000633169 911 ntBASIC27.49■■□□□ 1.99
FOXN1O15353 TMEM191A-211ENST00000637163 1067 ntBASIC27.49■■□□□ 1.99
FOXN1O15353 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
FOXN1O15353 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
FOXN1O15353 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
FOXN1O15353 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
FOXN1O15353 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
FOXN1O15353 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC27.47■■□□□ 1.99
FOXN1O15353 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
FOXN1O15353 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.47■■□□□ 1.99
FOXN1O15353 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC27.47■■□□□ 1.99
FOXN1O15353 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC27.47■■□□□ 1.99
FOXN1O15353 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
FOXN1O15353 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
FOXN1O15353 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
FOXN1O15353 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
FOXN1O15353 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
FOXN1O15353 AK1-201ENST00000223836 736 ntTSL 3 BASIC27.46■■□□□ 1.99
FOXN1O15353 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
FOXN1O15353 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
FOXN1O15353 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC27.46■■□□□ 1.99
FOXN1O15353 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
FOXN1O15353 MIR6722-201ENST00000617286 78 ntBASIC27.46■■□□□ 1.99
FOXN1O15353 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC27.46■■□□□ 1.99
FOXN1O15353 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.46■■□□□ 1.99
FOXN1O15353 SYT6-210ENST00000641643 1587 ntBASIC27.46■■□□□ 1.99
FOXN1O15353 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC27.45■■□□□ 1.99
FOXN1O15353 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.98
FOXN1O15353 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.45■■□□□ 1.98
FOXN1O15353 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC27.45■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms