Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CPSF4LA6NMK7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.14■□□□□ 0.98
CPSF4LA6NMK7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 LONRF2P2-201ENST00000439212 571 ntBASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CPSF4LA6NMK7 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4LA6NMK7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.13■□□□□ 0.97
CPSF4LA6NMK7 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4LA6NMK7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4LA6NMK7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CPSF4LA6NMK7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4LA6NMK7 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4LA6NMK7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4LA6NMK7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4LA6NMK7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CPSF4LA6NMK7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.12■□□□□ 0.97
CPSF4LA6NMK7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4LA6NMK7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4LA6NMK7 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4LA6NMK7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4LA6NMK7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CPSF4LA6NMK7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CPSF4LA6NMK7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 AC068473.5-201ENST00000616428 2072 ntBASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CPSF4LA6NMK7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 DUX4L18-201ENST00000553347 1267 ntBASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CPSF4LA6NMK7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 ABHD17AP5-201ENST00000580133 923 ntBASIC21.08■□□□□ 0.97
CPSF4LA6NMK7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CPSF4LA6NMK7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
CPSF4LA6NMK7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CPSF4LA6NMK7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
CPSF4LA6NMK7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 AC139795.1-202ENST00000500444 432 ntBASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.07■□□□□ 0.96
CPSF4LA6NMK7 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CPSF4LA6NMK7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4LA6NMK7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.05■□□□□ 0.96
CPSF4LA6NMK7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4LA6NMK7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CPSF4LA6NMK7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms