Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 CCDC92B-201ENST00000575506 885 ntBASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 GXYLT1P5-201ENST00000614548 1189 ntBASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 AC241377.3-202ENST00000626088 1088 ntBASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 AC241585.3-202ENST00000628937 1088 ntBASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC27.33■■□□□ 1.97
TMEM88BA6NKF7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.96
TMEM88BA6NKF7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 TSPY26P-201ENST00000476365 1326 ntBASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
TMEM88BA6NKF7 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC27.31■■□□□ 1.96
TMEM88BA6NKF7 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 AC066615.1-201ENST00000640911 628 ntBASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 AC009102.2-201ENST00000606772 1639 ntBASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
TMEM88BA6NKF7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 AC080038.1-201ENST00000611274 1154 ntBASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
TMEM88BA6NKF7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
TMEM88BA6NKF7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
TMEM88BA6NKF7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
TMEM88BA6NKF7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC27.28■■□□□ 1.96
TMEM88BA6NKF7 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
TMEM88BA6NKF7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC27.27■■□□□ 1.96
TMEM88BA6NKF7 MIR6084-201ENST00000622012 110 ntBASIC27.27■■□□□ 1.96
TMEM88BA6NKF7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
TMEM88BA6NKF7 AC006455.2-201ENST00000429931 906 ntBASIC27.26■■□□□ 1.95
TMEM88BA6NKF7 MIR3181-201ENST00000578512 73 ntBASIC27.26■■□□□ 1.95
TMEM88BA6NKF7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
TMEM88BA6NKF7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
TMEM88BA6NKF7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
TMEM88BA6NKF7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
TMEM88BA6NKF7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC27.25■■□□□ 1.95
TMEM88BA6NKF7 KRT18P14-201ENST00000534205 1250 ntBASIC27.25■■□□□ 1.95
TMEM88BA6NKF7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC27.25■■□□□ 1.95
TMEM88BA6NKF7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC27.24■■□□□ 1.95
TMEM88BA6NKF7 AP004609.3-201ENST00000610705 1884 ntBASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 C17orf82-201ENST00000623772 1530 ntBASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
TMEM88BA6NKF7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC27.22■■□□□ 1.95
TMEM88BA6NKF7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC27.22■■□□□ 1.95
TMEM88BA6NKF7 AC104771.1-201ENST00000603335 964 ntBASIC27.22■■□□□ 1.95
TMEM88BA6NKF7 RAP2CP1-201ENST00000605103 478 ntBASIC27.22■■□□□ 1.95
TMEM88BA6NKF7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
TMEM88BA6NKF7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC27.22■■□□□ 1.95
TMEM88BA6NKF7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 LINC01003-201ENST00000564834 1764 ntBASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
TMEM88BA6NKF7 AC012414.1-201ENST00000556676 535 ntBASIC27.2■■□□□ 1.94
TMEM88BA6NKF7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
TMEM88BA6NKF7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
TMEM88BA6NKF7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms