Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3-ACAD11A0A0J9YXS1 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP3-ACAD11A0A0J9YXS1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3-ACAD11A0A0J9YXS1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP3-ACAD11A0A0J9YXS1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP3-ACAD11A0A0J9YXS1 AL035685.1-201ENST00000636663 812 ntBASIC25.58■■□□□ 1.69
NPHP3-ACAD11A0A0J9YXS1 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 AC021242.3-201ENST00000607598 1377 ntBASIC25.57■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 BX664725.1-201ENST00000438252 379 ntBASIC25.57■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.57■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 AL022069.1-201ENST00000568025 1636 ntBASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.53■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.53■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.53■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.53■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.52■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.52■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.52■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.52■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.52■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.52■■□□□ 1.68
NPHP3-ACAD11A0A0J9YXS1 Z92544.1-202ENST00000571933 1220 ntBASIC25.51■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 MIR4787-201ENST00000607364 84 ntBASIC25.51■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.51■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.51■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC25.5■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 SNX5-217ENST00000606557 1087 ntBASIC25.5■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 AC004448.1-201ENST00000458332 883 ntBASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 KRT125P-201ENST00000546827 989 ntBASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP3-ACAD11A0A0J9YXS1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms