Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 FO393414.2-201ENST00000405153 598 ntBASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 AL031284.1-201ENST00000419297 478 ntBASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 AL671277.1-201ENST00000429656 993 ntBASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 TPT1P11-201ENST00000458482 498 ntBASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.72□□□□□ -0.37
KCNIP3Q9Y2W7 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms