Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 HNRNPA1P41-201ENST00000397777 928 ntBASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 SSR4P1-203ENST00000599569 2260 ntBASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 RN7SKP230-201ENST00000365642 335 ntBASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 NAGK-204ENST00000443872 878 ntTSL 3 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 RPL35-206ENST00000629845 340 ntTSL 5 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC28.34■■■□□ 2.13
SHROOM4Q9ULL8 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 LCK-206ENST00000373564 2137 ntTSL 5 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 PFN2-206ENST00000461930 606 ntTSL 4 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 MIR6858-201ENST00000620733 67 ntBASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM4Q9ULL8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 BUD31-205ENST00000456893 512 ntTSL 5 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 AC103810.10-201ENST00000606504 343 ntBASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM4Q9ULL8 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 AC138696.2-201ENST00000607376 223 ntBASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM4Q9ULL8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC28.31■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms