Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 AC023090.2-201ENST00000625182 2110 ntBASIC14.53□□□□□ -0.08
VPS29Q9UBQ0 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 AC015656.1-201ENST00000624209 3578 ntBASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 AL391825.1-201ENST00000457671 1364 ntBASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 SNX18-202ENST00000343017 3140 ntBASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS29Q9UBQ0 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 AL139094.1-201ENST00000405549 1188 ntBASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS29Q9UBQ0 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 KRT8P22-201ENST00000562317 1415 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 MIR770-201ENST00000390219 98 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 SOCS2P1-201ENST00000417727 557 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AC092552.1-201ENST00000547243 906 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AC123567.1-201ENST00000548294 1261 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 SPDYE22P-201ENST00000582158 798 ntBASIC14.51□□□□□ -0.09
VPS29Q9UBQ0 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms