Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC098850.1-201ENST00000419919 790 ntBASIC15.63■□□□□ 0.09
PCDH9Q9HC56 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 MYCLP2-201ENST00000449268 967 ntBASIC15.63■□□□□ 0.09
PCDH9Q9HC56 RPL13AP25-201ENST00000484130 612 ntBASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC140912.1-201ENST00000577171 1054 ntBASIC15.63■□□□□ 0.09
PCDH9Q9HC56 MIR3197-201ENST00000582241 73 ntBASIC15.63■□□□□ 0.09
PCDH9Q9HC56 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 AC093525.8-201ENST00000624099 1342 ntBASIC15.63■□□□□ 0.09
PCDH9Q9HC56 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
PCDH9Q9HC56 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 CRB3P1-201ENST00000449338 276 ntBASIC15.62■□□□□ 0.09
PCDH9Q9HC56 TPT1P11-201ENST00000458482 498 ntBASIC15.62■□□□□ 0.09
PCDH9Q9HC56 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 BRI3BPP1-201ENST00000594224 787 ntBASIC15.62■□□□□ 0.09
PCDH9Q9HC56 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 AL662799.1-202ENST00000614205 422 ntBASIC15.62■□□□□ 0.09
PCDH9Q9HC56 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.62■□□□□ 0.09
PCDH9Q9HC56 AC018665.1-201ENST00000622927 1362 ntBASIC15.62■□□□□ 0.09
PCDH9Q9HC56 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 AC027601.5-201ENST00000624065 2482 ntBASIC15.61■□□□□ 0.09
PCDH9Q9HC56 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.61■□□□□ 0.09
PCDH9Q9HC56 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms