Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIPK3Q9H422 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
HIPK3Q9H422 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.41■□□□□ 0.22
HIPK3Q9H422 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIPK3Q9H422 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.41■□□□□ 0.22
HIPK3Q9H422 AC074138.1-201ENST00000611182 1303 ntBASIC16.41■□□□□ 0.22
HIPK3Q9H422 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIPK3Q9H422 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIPK3Q9H422 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HIPK3Q9H422 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 RN7SL258P-201ENST00000478664 300 ntBASIC16.4■□□□□ 0.22
HIPK3Q9H422 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 STUB1-204ENST00000564370 875 ntTSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 AC005962.1-201ENST00000584100 773 ntBASIC16.4■□□□□ 0.22
HIPK3Q9H422 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 AC007718.1-201ENST00000621078 280 ntBASIC16.4■□□□□ 0.22
HIPK3Q9H422 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 KRT8P21-201ENST00000430398 1491 ntBASIC16.4■□□□□ 0.22
HIPK3Q9H422 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.4■□□□□ 0.22
HIPK3Q9H422 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 HYMAI-201ENST00000635591 3347 ntBASIC16.4■□□□□ 0.22
HIPK3Q9H422 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIPK3Q9H422 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
HIPK3Q9H422 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.39■□□□□ 0.22
HIPK3Q9H422 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.39■□□□□ 0.22
HIPK3Q9H422 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 FAM90A2P-201ENST00000511144 1395 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 FAM90A25P-201ENST00000528404 1395 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 AC136759.1-202ENST00000530858 2194 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 RN7SKP230-201ENST00000365642 335 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 OR2K2-202ENST00000374428 1038 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 RPS9P1-201ENST00000419943 583 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIPK3Q9H422 AC078875.1-201ENST00000431907 724 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 RN7SL67P-201ENST00000492147 296 ntBASIC16.39■□□□□ 0.21
HIPK3Q9H422 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.39■□□□□ 0.21
HIPK3Q9H422 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms